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5 protocols using rabbit anti cd9

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EV Protein Level Analysis via Western Blotting

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For analysis of protein levels in EVs, isolated EVs were lysed with RIPA buffer, followed by addition of 1X Laemlli buffer and incubation at 95°C for 5 min. Samples were subject to standard Western blotting with chemiluminescence detection. The following antibodies were used as recommended by the manufacturer: rabbit anti‐Src (Cat#: 2109, 1:1000), rabbit anti‐calnexin (Cat#: 2679, 1:5000), rabbit anti‐CD‐9 (Cat#: 13403 for human species, 1:1000), rabbit anti‐GAPDH (Cat#: 2118, 1:10,000), rabbit anti‐gamma‐tubulin (Cat#: 5886, 1:1000), and mouse anti‐Cas9 (Cat#: 14697, 1:1000) were all purchased from Cell Signaling Technology. Mouse anti‐VSV‐G (Cat#: EB0010, Kerafast, 1:1000), rabbit anti‐syntenin (Cat#: ab19903, Abcam, 1:1000), mouse anti‐CD63 (Cat#: 556019, BD Pharmingen, 1:500). Secondary antibodies anti‐rabbit IgG HRP (Cat#: 7074, 1:5000), anti‐mouse IgG HRP (Cat# 7076, Cell Signaling Technology, 1:5000). The anti‐myristoylated octapeptide antibody described in this study was used at dilutions of 1:250, 1:500, or 1:1000. Cas9 recombinant protein was purchased from Sigma Aldrich (Cat# Cas9Prot). EV protein analysis was done in accordance with the MISEV 2018 guidelines (Théry et al., 2018 (link)). The band intensity was quantified by Image J software.
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Western Blot Analysis of Exosomal Proteins

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Eluates and cell or exosome lysates were separated by SDS-PAGE electrophoresis in gradient 4–12% NuPAGE gels (Invitrogen, NP0321) and transferred onto PVDF membrane (Bio-Rad, 162-0264) using Western blot. Membranes were blocked for 1 h in Blotting-Grade Blocker (Bio-Rad, 165-3301) and subsequently incubated with primary antibodies for 1 h at room temperature. The TBS (tris-buffered saline) buffer supplemented with 0.1% Tween 20 (Sigma-Aldrich, P1379) was used in all steps. Rabbit anti-UCH-L5 (Abcam, ab133508), rabbit anti-USP10 (Cell Signaling Technology, 8501), rabbit anti-USP25 antibody (Abcam, ab187156), and mouse anti-tubulin antibodies (Abcam, ab59680), respectively, were used for UCH-L5, USP10, USP25, and tubulin detection. Rabbit anti-CD9 (Cell Signaling Technology, 13174) was used for detection of the CD9 exosome marker.
After incubation with appropriate horseradish peroxidase-labeled secondary antibodies and washing membranes in TBS supplemented with 0.1% Tween 20, proteins were detected using enhanced chemiluminescence reagents (GE Healthcare, RPN2209 or Thermo Fisher Scientific, 34094). Images were visualized on medical X-Ray blue film (AGFA NV, XDAOG).
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3

Extracellular Vesicle Protein Analysis

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EV samples were combined with SDS sample buffer (Boston Bioproducts, Ashland, Massachusetts, USA), separated by denaturing electrophoresis on precasting 4–12% Novex or 4–12% Bolt gels (Life Technologies, Carlsbad, California, USA), and then transferred onto a nitrocellulose membrane (Life Technologies) by applying 20 V for 7 min at RT. The blots were blocked with 5% milk in TBST (tris buffered saline-tween 20; Boston Bioproducts, Ashland, Massachusetts, USA) for 1 h at RT, and incubated with rabbit anti-CD9 (1:1000; Cell Signaling Technologies, Danvers, Massachusetts, USA), rabbit anti-Rab5 (1:300; Santa Cruz Biotechnology, Dallas, Texas, USA), rabbit anti-CD63 (1:200, Santa Cruz Biotechnology, Dallas, Texas, USA), rabbit anti-aquaporin-2 (1:1000; Abcam, Cambridge, Massachusetts, USA), and rabbit anti-Hsp70 (1:1000; Abcam) antibodies in blocking buffer overnight at 4°C. After incubation, the blots were washed with TBST and incubated for 1 h at RT with goat anti-rabbit HRP antibody (1:2000; Cell Signaling Technologies) in blocking buffer. Western Bright ECL (BioExpress, Kaysville, Utah, USA) was used to develop the blots. The equivalent of 3 ml of urine EVs was loaded per lane. In Figure 3(b), the immunoblot band intensity for AQ2, CD9, and Rab5 is represented in a heat map (Excel), with red being the most intense and blue being the least intense.
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ARPE-19 Protein Quantification via Western Blot

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Total protein was extracted from ARPE-19 cells by CytoBuster™ Protein Extraction Reagent (Novagen, Madison, WI, USA), then separated by 12% sodium dodecyl sulfate polyacrylamide gel electrophoresis. Proteins in gels were transferred onto polyvinylidene difluoride membranes (Millipore, Burlington, MA, USA). Membranes were blocked with 1% bovine serum albumin, then incubated with primary antibody (described below) overnight at 4°C. Membranes were then incubated with horseradish peroxidase-conjugated anti-rabbit IgG secondary antibody (Abcam, Cambridge, MA, USA) at room temperature for 1 hour. Enhanced Chemiluminescence Reagent (Bio-Rad Laboratories, Hercules, CA, USA) was used to visualize immunoreactive bands. Primary antibodies were as follows: rabbit anti-VEGF (sc-7269; Santa Cruz Biotechnology), rabbit anti-GAPDH (5174; Cell Signaling Technology, Danvers, MA, USA), rabbit anti-CD9 (8457; Cell Signaling Technology), and rabbit anti-CD63 (sc-15363; Santa Cruz Biotechnology). Protein levels were quantified by ImageJ software (National Institutes of Health, Bethesda, MD, USA).
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5

EV Protein Characterization by SDS-PAGE and Immunoblotting

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For SDS‐PAGE, a volume of EVs corresponding to 1.5 μg of total protein was prepared in Laemmli sample buffer (BioRad 1610747) containing β‐mercaptoethanol and heated at 95°C for 5 minutes. Proteins were separated through a 4%–12% NuPAGE Bis‐Tris gel (Invitrogen), transferred to an Immobilon‐FL PVDF membrane (Millipore), and detected as described previously (Yang et al., 2011 (link)). After blocking with Intercept blocking buffer (Licor Biosciences), the following antibodies were used: mouse anti‐calnexin (BD Biosciences 610523, 1:500), rabbit anti‐GM130 (Abcam ab52649, 1:500), mouse anti‐cytochrome c (BD Biosciences 556433, 1:1000), rabbit anti‐CD9 (Cell Signaling Technologies 13174, 1:1000), mouse anti‐TSG101 (BD Biosciences 612696, 1:500), and mouse anti‐THP (Santa Cruz Biotechnology sc‐271022, 1:1000), rabbit anti‐beta‐actin (Invitrogen, PA1‐16889, 1:5000), donkey anti‐mouse IgG IRDye 800CW (LiCor 925–32212, 1:10,000), and donkey anti‐rabbit IgG IRDye 680RD (LiCor 926–68073, 1:10,000).
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