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Primescript first strand cdna synthesis kit

Manufactured by Takara Bio
Sourced in Japan, China, United States

The PrimeScript First Strand cDNA Synthesis Kit is a reagent kit designed to perform reverse transcription and generate complementary DNA (cDNA) from RNA templates. The kit contains the necessary components, including reverse transcriptase enzyme and buffer, to synthesize the first strand of cDNA from total RNA or mRNA samples.

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541 protocols using primescript first strand cdna synthesis kit

1

RNA Extraction and RT-qPCR Analysis of E. coli

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All sampling for RNA extraction was performed in the exponential phase of the E. coli strains with and without deipr_0871 under non-stressed and stressed conditions (0.45 mM H2O2), and without and with a high concentration of glucose (30 g/L). Total RNA was extracted using the RiboEx reagent (GeneAll, Seoul, Republic of Korea) supplied with DNase, and purified using the RNeasy Mini Kit (Qiagen, Hilden, Germany) according to the manufacturer’s instructions. RNA quality and concentration were estimated by measuring the optical densities of the solutions at 260 and 280 nm using a GeneQuant Pro instrument (Amersham Pharmacia Biotech, Amersham, UK). RNA (1 µg) from each sample was used for cDNA synthesis with random hexamers using a PrimeScript first-strand cDNA synthesis kit (TaKaRa Bio Inc., Kusatsu, Japan). RT-qPCR amplification was performed using SYBR Premix Ex Taq (TaKaRa) and an Eco Real-Time PCR system (Illumina Inc., San Diego, CA, USA) according to the manufacturer’s instructions. The housekeeping gene polA was used as an internal control. Primers used for RT-qPCR are listed in Table S1. All reactions were repeated in duplicates, and the relative expression was calculated using the relative quantification method.
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2

Quantitative Gene Expression Analysis

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Total RNA from Arabidopsis and wheat seedlings was extracted using an RNAprep plant kit (TIANGEN, China). First-strand cDNA was synthesized using a PrimeScript First-Strand cDNA Synthesis kit (TaKaRa, Japan). The qRT-PCR reactions were performed using an ABI Prism 7500 real-time PCR system (ThermoFisher Scientific, USA) using SYBR Green Master Mix (TIANGEN, China) in a total volume of 25 μl and was performed with three technical replications for each sample. A quantitative analysis was performed using the 2-ΔΔCT method [63 (link)].
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3

Gene Expression Analysis Protocol

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Total RNA extraction was performed as previously described [38 (link)]. First-strand cDNA was synthesized with the PrimeScript first-strand cDNA Synthesis Kit (TaKaRa Bio Inc., Shiga, Japan) as previously described [35 (link)]. qPCR was performed as previously described [39 (link)]. The following primer sequences were used: human p21, 5′-GATTTCTACCACTCCAAACGCC-3′ (forward) and 5′-AGAAGATGTAGAGCGGGC-3′ (reverse) [40 (link)]; human Sestrin2, 5′-GACCATGGCTACTCGCTGAT-3′ (forward) and 5′-GCTGCCTGGAACTTCTCATC-3′ (reverse) [41 (link)]; human HPRT1, 5′-TTTGCTTTCCTTGGTCAGGC-3′ (forward) and 5′-GCTTGCGACCTTGACCATCT-3′ (reverse) [40 (link)]. The specificities of the detected signals were confirmed by a dissociation curve, which consisted of a single peak. Values were normalized by HPRT1.
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4

Quantifying METTL3 Expression in NTD

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m6A methyltransferase METTL3 expression in brain tissues of the NTD and control groups was detected by real-time qRT-PCR. Total RNA was extracted from brain tissues using TRIzol reagent (Invitrogen). Reverse transcription for cDNA synthesis was performed using the PrimeScript™ first strand cDNA Synthesis Kit (Takara, Beijing, China). Real-time qRT-PCR was conducted using Power SYBR Green PCR Master Mix (Thermo Fisher Scientific, Waltham, MA, USA) and the 7900HT Fast qPCR System (Applied Biosystems, Foster City, CA, USA). Cycling conditions were as follows: initial denaturation at 95°C for 10 min and 40 cycles of 95°C for 15 s and 60°C for 60 s, followed by a melt curve analysis from 60°C to 95.0°C in increments of 0.5°C per 10 s. The internal control was glyceraldehyde-3-phosphate dehydrogenase (GAPDH), and the relative expression levels of lncRNAs and genes were calculated using the 2−ΔΔCT method.
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5

Transcriptomic Analysis of Peach Variety Xiahui 5

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The peach variety “Xiahui 5” is planted in the experimental base of Shandong Agricultural University, with fruit round, creamy yellow pericarp, more than 80% of the fruit surface with red, white meat, delicate flesh, ripe in mid-July, and a fruiting time of about 100 days [33 (link)]. Samples of leaves, stems, flowers, and fruits were collected. Total RNA was extracted from the samples using an RNA extraction kit (Tiangen, Beijing, China), and the RNA purity was determined using an ultra-micro UV analyzer to confirm that the OD260/OD230 ratio was between 1.8 and 2.1. First-strand cDNA was synthesized using the PrimeScript first-strand cDNA synthesis kit (Takara, Dalian, China). Real-time quantitative polymerase chain reaction (qRT-PCR) was performed on the ABI7500 system using the SYBR premix ExTaq (Takara, Dalian, China) with the following procedure: 95 °C for 5 min, followed by 45 cycles at 95 °C for 10 s, 58 °C for 10 s, and 72 °C for 20 s. Reaction volume is 25 μL (including UItraSYBR Mixture (CWBIO, Taizhou, China) 12.5 μL, primer-F 0.5 μL, primer-R 0.5 μL, ddH2O 10.5 μL, cDNA 1 μL), with three biological replicates per sample. The relative expression level was calculated by the 2−ΔΔCT method [34 (link)]. Primers for qRT-PCR are listed in Table S1.
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6

qRT-PCR Analysis of eIF4E1 Expression

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For qRT-PCR analysis, total RNA was extracted from 7-day-old seedlings using the RNeasy plant mini kit (Qiagen), and the first-strand cDNA was synthesized using the Takara PrimeScript First-strand cDNA synthesis kit (TAKARA). Next, PCR was performed on an Illumine Eco (Illumina) System with an SYBR probe (TAKARA). Expression levels of eIF4E1 were normalized to the expression level of two reference genes (ACTIN 2 and TUBULIN 2), respectively. The primers used are listed in Supplementary Table S1. Results obtained from three biological repeats with standard deviation (SD).
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7

Quantifying Differential Gene Expression

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Total RNA was isolated from that obtained from the injured spinal cord (2-mm-long tissue samples) using an RNeasy Micro kit (Qiagen, Hilden, Germany). For cDNA synthesis, a reverse transcription reaction was performed using a Prime Script first-strand cDNA Synthesis kit (Takara Bio, Kusatsu, Japan). qRT-PCR was performed using primers that we’re interested in experiment and the SYBR Green Master Mix (Takara Bio, Kusatsu, Japan). The primer sequence is given in Table 1. The target mRNA level was normalized to the level of the GAPDH and compared with the control. Data were analyzed using the ΔΔCT method.
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8

Quantifying Ferroptosis Gene Expression

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Total RNA from erastin-treated A549 and H1299 cells was extracted using TRIzol reagent (Life Technologies), and according to the manufacturer’s instructions, Primescript first-strand cDNA synthesis kit (Takara, Dalian, China) was used to turn the extracted RNA into cDNA. The SYBR-Green kit (Takara, Dalian, China) was applied to undertake real-time PCR in order to measure the levels of ferroptosis genes’ mRNA expression. The computation is based on the 2-∆∆CT approach, and β-actin was used as a comparison to normalize the expression and evaluate the relative expression of each group. The real-time PCR primers were purchased from Tsingke Biotechnology and are provided in Table S1.
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9

Quantifying Neuronal Gene Expression

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Animals were killed 2 h post a single Flx (15 mg/kg) or saline injection by decapitation; the PFC was dissected out and snap-frozen in liquid nitrogen. RNA was extracted using Tri reagent (Sigma) and reverse transcribed using a cDNA synthesis kit (PrimeScript First Strand cDNA Synthesis Kit, Takara Bio). qPCR was performed with primers for the genes of interest (Supplementary Table S1) using a Bio-Rad CFX96 real-time PCR machine. Data were analyzed using the ΔΔCt method, as described previously [17 (link)]. Normalization was done using hypoxanthine guanine phosphoribosyl transferase (Hprt), whose level was unaltered across experimental groups. Gene expression of IEGs analyzed included activity regulated cytoskeleton associated protein (Arc), brain-derived neurotrophic factor (Bdnf), early growth response gene 1-4 (Egr 1-4), FBJ osteosarcoma gene (Fos), FBJ murine osteosarcoma viral oncogene homolog B (Fosb), Fos-like antigen 2 (Fosl2), Homer scaffolding protein 1-3 (Homer 1-3), Jun proto-oncogene (Jun), Jun B proto-oncogene (Junb), Jun D proto-oncogene (Jund). qPCR analysis was also performed for the 5-HT2A gene (Htr2a) to further confirm our genotyping results.
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10

Quantifying HYAL2 mRNA Expression via qPCR

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Total RNA was extracted from cells using TRIzol reagent (Invitrogen) according to the manufacturer’s instructions. To generate cDNA, the following primer pairs were used: HYAL2 (accession number NM_003773): forward primer, 5′-GGCCCCACCGTTACATTGG-3′, and reverse primer, 5′-ATTCTGGTTCACAAAACCCTCAT-3′ (207 base pairs); and glyceraldehyde-3-phosphate dehydrogenase (GAPDH; accession number NM_002046): forward primer, 5′-CCTGACCTGCCGTCTAGAAA-3′, and reverse primer, 5′-TACTCCTTGGAGGCCATGTG-3′ (276 base pairs). All RNA sequences were designed and produced by Invitrogen. Total RNA was reverse transcribed into cDNA using a PrimeScript first-strand cDNA Synthesis Kit (Takara, Dalian, China), and amplification was performed using SYBR Premix Ex Taq (Takara). HYAL2 mRNA expression was measured via qPCR, starting with 600 s at 95°C and followed by 40 cycles of denaturation (95°C for 15 s), annealing (60°C, 60 s), and elongation (72°C, 75 s). Relative quantification was calculated by normalizing the 2−ΔΔCt values to those of GAPDH.
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