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Cytofix cytoperm solution

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Cytofix/Cytoperm solution is a fixation and permeabilization reagent used in flow cytometry applications. It is designed to prepare cells for intracellular staining and analysis. The solution helps to maintain the integrity of cellular structures while allowing antibodies or other probes to access the intracellular compartments.

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594 protocols using cytofix cytoperm solution

1

Intracellular Cytokine Staining Protocol

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After the cells were stained for surface markers, they were fixed and permeabilized using Cytofix/Cytoperm solution (BD Biosciences kit) for 20 min at 4°C. Following this, the cells were washed 2× with Perm/Wash solution (provided in the kit), stained with Abs against perforin or cytokines for 30 min at RT, washed with Perm/Wash solution once more, and analyzed using the flow cytometer.
For intracellular cytokine analysis, the samples were stimulated with PMA (25 ng/mL), ionomycin (1µM), and Brefeldin A (10 µg/mL) (all from Sigma) and incubated for 4 hrs at 37°C (5% CO2). 
For IFNγ and TNFα staining, the following procedure was used:

Stain for surface antibodies.

Wash cells with PBS (1X) two times.

Pellet the cells and add 250 µL of BD Cytofix/Cytoperm solution (for purposes of fixation and permeabilization; BD Biosciences, Cat # 554722). Vortex the cells at 400 rpm while adding this solution.

Incubate in the dark for 30 min at 4°C.

Add 2 mL of BD Perm/Wash (1X, BD Biosciences, Cat # 554723). Centrifuge at 1500 rpm for 5 min (2×).

Add 5 µL of Antibody (10 ng/µL) TNFα and IFNγ. Incubate in the dark for 30–40 min.

Wash 2× with Perm/Wash solution.

Add 500 µL of Perm/Wash solution and analyze using BD LSR II Flow cytometer.

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2

Cell Phenotyping and Proliferation Assays

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For analyses of lymphocyte development or CSR, single-cell suspensions derived from bone marrow, thymus, or spleen were incubated with Fc block (BD Pharmingen) at a density of 1 × 106 cells/mL on ice for 15 minutes prior to staining with the indicated fluorescent antibodies (1:500) at 4°C for 30 minutes. For cell proliferati on assays, purified splenic CD43- B cells were incubated with 10 μM CFSE (eBioscience) at a density of 1 × 106 cells/mL in the dark at 37°C for 10 minutes and quenched with FBS on ice for five minutes prior to stimulation with LPS or anti-CD40 plus IL-4. For cell cycle analyses, cells were fixed in Cytofix/Cytoperm solution (BD Biosciences) at 4°C for 15 minutes, washed with PBS, frozen in 10% DMSO/FBS at −80°C overnight, thawed, re-fixed in Cytofix/Cytoperm solution at 4°C for 5 minutes, washed again with PBS, and incubated with 7-AAD (BD Pharmingen) at room temperature for 10 minutes. Data were acquired on a LSR II flow cytometer (BD Biosciences) and analyzed using FlowJo software (FlowJo, LLC).
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3

Apoptosis Induction by SBA Treatment

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Upon reaching 80% confluence, the cells were treated with 0, 0.125, 0.25, 0.5, 1.0, or 2.0 mg/mL SBA for 24 h. FITC active caspase-3 apoptosis kit (BD Pharmingen, La Jolla, CA, USA) was used to determine the cell apoptosis by FCM according to the manufacturer’s instructions. In brief, the cells in different treatments were washed with cold phosphate buffer solution (PBS), then resuspend cells in BD Cytofix/Cytoperm™ solution at a concentration of 1 × 106 cells/0.5 mL. After incubation for 20 min on ice, BD Cytofix/Cytoperm™ solution was discarded and the cells were washed twice with BD Perm/Wash™ buffer at room temperature. The cells were then incubated with BD Perm/Wash™ buffer plus antibody at room temperature for 30 min. Each test was washed in 1.0 mL BD Perm/Wash™ buffer, then the test was suspended in 0.5 mL BD Perm/Wash™ buffer. A minimum of 1 × 104 cells were collected and analyzed using FCM. The optimal concentration of SBA was selected for the next experiment.
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4

Apoptosis Detection by Caspase-8 and TUNEL

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Cells were fixed and permeabilized with BD Cytofix/Cytoperm™ solution (BD biosciences). Completely washed, fixed cells were incubated with an anti-cleaved caspase-8 antibody (Cell Signaling) for 2 h, washed with PBS buffer, and incubated with goat anti-rabbit immunoglobulin G antibody conjugated with an FITC fluorescent dye (SantaCruz) for 1 h. Cells were then washed with PBS buffer and stained with DAPI (Sigma). Tunel staining was performed using the fluorometric TUNEL staining kit (Promega Corporation). In brief, cells were fixed and permeabilized with BD Cytofix/Cytoperm™ solution (BD biosciences). After washing, cells were treated with 50 μl of recombinant fluorescein-12-dUTP cocktail for 1 h at 37°C in a humidified chamber. Cells were then placed onto a slide glass with mounting medium with DAPI and the slides were sealed. Cells were examined in an LSM510 Meta confocal fluorescence microscope (Zeiss).
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5

BrdU Proliferation Assay Protocol

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5’-bromo-2’-deoxyuridine (BrdU) detection of proliferation was performed as previously described (6 (link)). Briefly, mice were administered 0.8 mg of BrdU by i.p. injection, and maintained on BrdU in drinking water (0.8 mg/mL, plus 10% dextrose), ad libitum, from days 4-8 post-infection. Peritoneal cavity wash cells were stained for surface markers, and fixed using a BD Cytofix/Cytoperm solution, for 30 minutes at 4°C. Prior to pelleting the cells, BD Perm/Wash solution was added. Cells were then resuspended in 10% dimethyl sulfoxide (DMSO) in BD Perm/Wash solution and incubated for 10 minutes at 4°C. Cells were then fixed again with BD Cytofix/Cytoperm solution for 5 minutes at 4°C. DNase I in 1x Phosphate Buffered Saline (PBS) was then incubated on the cells for 1 hour at 37°C. The cells were then stained with FITC-conjugated anti-BrdU (Bu20a) diluted in BD Perm/Wash solution for 30 minutes at room temperature. Cells were then washed and analyzed as below.
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6

Cell Cycle Analysis by Flow Cytometry

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MDA-MB-468 and SW527 cells were digested, harvested and washed twice with PBS. BD Cytofix/Cytoperm™ solution (BD, San Diego, CA) was used for simultaneous fixation and permeabilization. A total of 6×105 cells were thoroughly resuspended in 150 μl of BD Cytofix/Cytoperm solution. After incubation for 20 min at 4 ℃, the cells were washed twice with BD Perm/Wash™ buffer and incubated with 200 μl of dyeing buffer containing 0.1 mg/ml propidium iodide and 2 mg/ml RNase A for 30 min at 37℃ in dark. Finally, the cells were analyzed by flow cytometry.
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7

Intracellular Cytokine Profiling of Stimulated Lymphocytes

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Lymphocytes from the spleens and PLNs of VH125SD.NOD mice were cultured in 96-well plates in the presence or absence of plate-bound anti-CD3ε (145–2C11, BD Biosciences) and soluble anti-CD28 (37.51, BD Biosciences) stimulation. Stimulated wells were coated with anti-CD3ε and washed with PBS prior to adding media and cells. All cells were cultured in cell culture media (RPMI 1640 [Cellgro] containing 10% FBS, 1% L-glutamine, 1% HEPES, 0.2% gentamicin, and 0.1% 2-ME; Life Technologies). For stimulated wells, 1μg/ml anti-CD28 (clone 37.51; BD Pharmingen) in cell culture media was added. For unstimulated wells, media alone was added. Cells were cultured at 38°C at 5% CO2 for 60h. Intracellular cytokine staining for IL-21 (mhalx21, eBioscience) was performed using BD Cytofix/Cytoperm™ solutions (BD Pharmingen) according to manufacturer’s instructions after stimulation for 4h with PMA (50ng/ml; Sigma), ionomycin (500ng/ml; Sigma), and monensin (2μM; eBioscience). Intracellular cytokine staining for IL-10 (JES5–16E3, BioLegend) was performed using BD Cytofix/Cytoperm™ solutions (BD Pharmingen) after stimulation for 4h with PMA, ionomycin, LPS, and monesin as previously described (29 (link)).
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8

Flow Cytometric Analysis of WT1 Expression

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1 × 105 293T cells were transduced with 1 × 102 ng p24 equivalent of GL-IDLV-G2α-tWT1 and harvested 8 days after transduction. Cells were permeabilized and fixed with Cytofix/Cytoperm solution (Becton Dickinson [BD], Heidelberg, Germany) according to the manufacturer’s instructions, followed by incubation with monoclonal mouse anti-WT1 and a secondary antibody (antibodies used are listed in Table S1). Cells were then washed with BD Perm/Wash solution (BD) and analyzed by flow cytometry.
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9

Labyrinthin Expression Analysis in Lung Cells

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Mouse monoclonal anti-labyrinthin antibody MCA 44-3A6 was provided by the current lab [9 ] as grown using standard hybridoma technology and purified by 50% saturated ammonium sulphate precipitation and ion exchange chromatography or by a commercial kit (Pierce™ Antibody Clean-up Kit). Cytofix/Cytoperm solution, Perm/Wash buffer, biotinylated goat anti-mouse antibody, Fluorescein-5-isothiocyanate (FITC)-conjugated goat anti-mouse antibody, FITC-conjugated streptavidin, and propidium iodide were obtained from Becton Dickinson. BSA, trypan blue, and sodium azide were obtained from Sigma, and PBS (phosphate buffer saline) was purchased from Media Tech. Cell lines were obtained and grown as recommended by the American Type Culture Collection (Manassas, VA). Labyrinthin-negative WI-38 normal human lung fibroblast cells (negative control) and A549 human lung adenocarcinoma (positive control) cells were used in this experiment. Because adenocarcinomas are neoplasia of epithelial tissue that have a glandular origin, normal primary cultures of human astrocytes, renal proximal tubule epithelial cells, and small airway epithelial cells were selected as counter models in this study.
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10

Immunofluorescence analysis of titin in cells

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HL-1 cells were fixed and permeated with Cytofix/Cytoperm™ solution (Becton Dickinson, Franklin Lakes, NJ, USA), followed by washes with Perm/Wash™ buffer (Becton Dickinson, Franklin Lakes, NJ, USA). Non-specific antibody binding was blocked by incubation with 5% bovine serum albumin (BSA). Titin PEVK domain was stained with primary antibody 9D10 (Developmental Studies Hybridoma Bank at the University of Iowa, Iowa, USA) 1:100 diluted in 5% BSA, followed by secondary antibody Cy™5 (Invitrogen, Life Technologies, Grand Island, NY, USA) 1:100 diluted in 5% BSA. Nuclei were counterstained with DAPI. The patterns of titin staining were analyzed by Zeiss LSM 510 Confocal Microscope (Zeiss, Göttingen, Germany).
For determination of titin pattern in mouse heart tissue, 7 μm-thick cryosection slides of heart tissue were fixed and permeated with 0.2% PBST, and then blocked with 10% normal rabbit serum (NRS) in 0.2% PBST. Titin was stained with antibody 9D10 in 5% NRS and subsequently with the secondary antibody same as aforementioned. Confocal images were analyzed by software ImageJ (NIH, Bethesda, Maryland, USA).
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