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Verteporfin

Manufactured by Merck Group
Sourced in United States, Germany

Verteporfin is a photosensitizing agent used in medical and research laboratories. It is a white to pale yellow crystalline powder that absorbs light in the visible spectrum and can be activated by specific wavelengths of light.

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138 protocols using verteporfin

1

Assessing SKOV-3 Cell Viability

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siRNA-transfected SKOV-3 cells were seeded in a 96-well plate (2,000 cells/well), and the number of cells was measured daily using a Cell Counting Kit-8 (CCK-8) assay (Dojindo Molecular Technologies, Inc., Kumamoto, Japan) for 5 days. For the verteporfin (#SML0534; Sigma-Aldrich) treatment experiments, 6,000 SKOV-3 cells were seeded per well and treated with the indicated concentrations of verteporfin (0.1, 0.3, 1.0, 3.0 and 9.0 µM) for 1 day, incubated at 37°C with 5% CO2. Cell viability was measured by CCK-8 assay (Dojindo Molecular Technologies, Inc.), according to the manufacturer's protocol.
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2

Verteporfin Treatment of Zebrafish Embryos

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Verteporfin treatment: a 2 mg/ml stock solution of Verteporfin (SML0534, Sigma) was prepared in dimethylsulfoxide (DMSO). Embryos were incubated from the 1 cell stage to 24 hpf with Verteporfin diluted in 0.3 x Danieau buffer at a final concentration of 2.5 µM.
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3

Verteporfin Cytotoxicity Assay Protocol

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For in vitro assays, cell lines were seeded on 10mm dishes. Once at 60-70% confluency, the cells were treated with Verteporfin (Sigma-Aldrich, #SML0534, St Louis, MO, USA) for 48 h. Verteporfin was dissolved in dimethyl sulfoxide (DMSO).
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4

Modulating Junctional Adhesion Molecule-A in Cell Lines

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SKCO-15 (male), SW480 (male), and HEK293T (female) cells were grown in high glycose DMEM supplemented with 10% fetal bovine serum, 100 IU of penicillin, 100μg/ml streptomycin, 2 mM L- glutamine, 15 mM HEPES, pH 7.4, and 1% non-essential amino acids. HA-tagged JAM-A, JAM- A-WT, and JAM-A-DL1 pcDNA3.1 constructs were described per our previous report (Mandell et al., 2004 (link)). Plasmids were transfected with FuGENE 6 (Promega, E2691) for HEK293T cells and Lipofectamine™ 3000 (Thermo Fisher Scientific, L3000015) for SKCO-15 and SW480 cells, according to the manufacturer’s protocols. For knockdown studies, subconfluent (∼20-30% confluent at time of transfection) SKCO-15 or HEK293T cells were transfected with 30pmol siRNA (siRNA sequences detailed in the key resources table) using Lipofectamine™ RNAiMAX reagent (Thermo Fisher Scientific, 13778075). IEC monolayers were harvested 48 hours after transfection (∼50% confluent) and knockdown was verified by Western blot. For Verteporfin studies, cells were treated in the dark for 6 hours with 10μM Verteporfin (Sigma-Aldrich, SML0534) diluted in cell media prior to harvest. For TEAD knockdown studies, 4 siRNA targets (120pmol total siRNA) for each TEAD were applied cells followed by harvest 48 hours later.
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5

Verteporfin Modulates VEGF-Induced Effects on TM Cells

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Semiconfluent cultures of human TM cells were incubated overnight in serum-free media unless otherwise noted. Then, serum-starved cultures were subjected to different VEGF concentrations (1 ρg/mL, 10 ρg/mL, 100 ρg/mL, 1 ng/mL, 10 ng/mL, and 30 ng/mL) for 48 h (Figure 8A). In the control cultures, the medium was changed at the same time points, but without VEGF. In another set of experiments, the aforementioned experiments with 30 ng/mL VEGF were performed. The cells were divided into three groups based on the subsequent treatment protocol. (1) VEGF-only group: human TM cells were untreated after VEGF exposure; (2) VEGF + Vehicle group: human TM cells were treated with the vehicle (phosphate-buffered saline; PBS) solution for 24 h after exposure to VEGF; (3) VEGF + verteporfin group: human TM cells were treated with 1 μM verteporfin (Sigma-Aldrich; St. Louis, MO, USA) for 24 h after exposure to VEGF. In the control group, the medium was changed at the same time points without VEGF, vehicle, or verteporfin exposure. The verteporfin concentration used in this study has been verified as safe and efficacious in human TM cells and other ocular cells [15 (link),51 (link)]. After the treatments, the cells were processed for Western blotting, quantitative real-time polymerase chain reaction (PCR), and immunocytochemistry (Figure 8B).
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6

Molecular Markers in Cell Signaling

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Verteporfin (#SML0534) and antibodies recognizing β-actin (#a2228), FLAG® M2 (#F1804), glyceraldeyde-3-phosphate dehydrogenase (GAPDH, #CB1001) and 17-β-estradiol (#E1024) were purchased from Merck (Billerica, MA, USA). Antibodies recognizing YAP/TAZ (#8418), p-YAP (Ser127) (#4911), zinc finger E-box binding homeobox1 (ZEB1, #3396), Src (#2108), p-Src (Tyr416) (#2101), horseradish peroxidase-conjugated donkey anti-rabbit IgG (#7074), and horseradish peroxidase-conjugated donkey anti-mouse IgG (#7076) were purchased from Cell Signaling Technology (Danvers, MA, USA). Antibodies recognizing E-cadherin (#610181) and N-cadherin (#610920) were purchased from BD Biosciences (San Jose, CA, USA). The antibody recognizing p-YAP (Tyr357) (ab62751) was purchased from Abcam (Cambridge, United Kingdom). Antibodies recognizing Vimentin (sc-32322) was purchased from Santa Cruz biotechnology (Dallas, TX, USA). V5 Tag (#A190-120A), Alexa Fluor 488 donkey anti-mouse IgG and Alexa Fluor 568 goat anti-rabbit IgG were purchased from Thermo Fisher Scientific (Cleveland, OH, USA). Saracatinib (#S1006) and PP2 (#S7008) were purchased from Selleckchem (Houston, TX, USA). G418 was purchased from Biosesang (Gyeonggi-do, South Korea).
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7

Pharmacological Inhibition of Yap/Taz Signaling

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Verteporfin (VP, #SML0534, Merck, USA), ML-7 hydrochloride (ML7, #I2764, Merck, USA), Cytochalasin D (CD, #C8273, Merck, USA), AICAR (AI, #A9978, Merck, USA) were used as pharmacological inhibitors of Yap/Taz activity. Depending on the solubility of the substances, water, ethanol 96%, or Cyrene (dihydrolevoglucosenone, #807796, Merck, USA) [163 (link)] were used as solvents to prepare stock solutions. The stock solutions of VP were prepared with 10% (v/v) solution of Cyrene in water, ML7—with 50% (v/v) solution of ethanol in water, CD—with 100% (v/v) ethanol, and AI—with 100% (v/v) water.
A volume of 30 μL of stock solutions were pipetted onto the medium surface of each experimental vial. In a control vial, 30 μL of corresponding solvent were pipetted. The final concentrations of substances in the food media were estimated using blue food dye (Brilliant Blue FCF, Roha Dyechem Ltd., Mumbai, India) as a tracer of stock solution diffusion [164 (link)]. The obtained results demonstrated a 1:30 dilution of the stock solutions and a final concentration of VP—0.01, 0.1, 1, 10 μM, ML7—0.01, 0.1, 1 μM, CD, and AI—0.1, 1 μM.
Treatment with inhibitors was started from the first day of imago life and continued for 10 days for analysis of survival throughout the lifetime for qRT-PCR assay.
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8

Verteporfin Modulates Schwann Cell Signaling

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Primary cells were treated with 2 and 10 μM Verteporfin (Sigma SML0534). At 4 h after treatment, cells were stimulated with 20 ng μl−1 neuregulin-1 β isoform (heregulin-β 1, R&D Systems). RNA was harvested at 24 h after treatment, and cDNA was analyzed by RT-qPCR using the following primers:
18S (Forward: cgccgctagaggtgaaattct, Reverse: cgaacctccgactttcgttct),
ErbB2 (Forward: aggtctggagggaacatcct, Reverse: tgggatgcatgtgtctcagt),
Cdc42 (Forward: gctctggagatgcgttcatag, Reverse: gaagcaatattggctgccttg),
Egr2 (Forward: gcactctgtggccctagaaca, Reverse: ggctgagatggctcgagaaa),
Sox10 (Forward: cgaattgggcaaggtcaaga, Reverse: caccgggaacttgtcatcgt),
Itga6 (Forward: cgagagatcaacgacgagaaac, Reverse: tctttcctacaccctcctctatg),
Dag1 (Forward: ctcccagggtgtttcagact, Reverse: tcagagcaaccaaggtgaca).
The S16 rat Schwann cell line 56 (link) was obtained from Richard Quarles, cultured as described 52 (link), and expresses relatively high levels of myelin genes 25 (link).
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9

Optimizing Cell Culture Conditions

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Dulbecco's modified Eagle medium and fetal bovine serum (Gibco BRL, USA); trypsin, LPS, MTT (Sigma Chemical Co., MO, USA); penicillin and streptomycin (Sunshine Biotechnology, Nanjing, China); and antibodies to YAP, CTGF, Cyr 61, AREG, TEAD1, EP1-EP4, β-catenin, COX-2, MST1, β-catenin siRNA, short hairpin RNA (shRNA) of YAP, COX-2, EP2, MST 1 and HRP-linked goat anti-mouse IgG and horseradish peroxidase (HRP)-linked anti-rabbit IgG were obtained from Santa Cruz (CA, USA). YAP,YAP(5SA), YAP(5SA/S94A) expression plasmids were obtained from Addgene (USA). doxycycline inducible YAP lentivirus expression plasmid (PIN20YAP) was previously described [14] (link). EP1-EP4 antibodies, Butaprost, and AH6809 were from Cayman Chemical (Ann Arbor, MI). Celecoxib, verteporfin, and doxycyclin were purchased from Sigma-Aldrich (St. Louis, MO). Other agents were the highest quality available in market.
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10

Toxic Exposure Impact on hiPS-Ch Viability

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KBD-hiPS-Ch and N-hiPS-Ch were seeded in 96-well plates at a density of 1 × 104 cells per well and treated with various concentrations of T-2 toxin (1, 2.5, 5, 10 ng/mL), DON (100, 250, 500, 1000 ng/mL), and 1:100 T-2+DON toxin (1 + 2.5, 2.5 + 250, 5 + 500, 10 + 1000 ng/mL) for 48 h. We used 0.1–10 μM verteporfin (Sigma, Cat.SML0534) to inhibit YAP protein expression in hiPS-Ch for 48 h. Cell viability was then tested using a cell-counting kit (CCK8, NCM Biotech, Suzhou, China). The absorbance at 450 nm was used to calculate relative viability using a microplate reader (Model 3550, Bio-Rad, Hercules, CA, USA).
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