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The LTQ XL is a linear ion trap mass spectrometer designed for high-performance liquid chromatography (HPLC) applications. It provides accurate mass measurement and high sensitivity for a wide range of analytes. The LTQ XL is capable of performing advanced tandem mass spectrometry (MS/MS) experiments to facilitate compound identification and quantification.

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192 protocols using ltq xl

1

Quantitative Assessment of Phenolic Compounds

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Quantitative assessment of phenolic compounds was carried out through HPLC–MS (LTQ XL, Thermo Fisher Scientific, San Jose, CA, USA) analysis (Świeca et al. 2012 (link)). The HPLC–MS system was equipped with a ternary pump, auto sampler, and thermostatic column compartment, diode array detector (Surveyor, Thermo Fisher), and a linear ion trap mass spectrometer (LTQ XL, Thermo Fisher Scientific, San Jose, CA, USA) equipped with an electrospray ionization (ESI) source. A CORTECS C18 column (2.1 mm × 100 mm, 2.6 µm; Waters) was used; the column temperature was maintained at 35 °C. The mobile phase A (0.1% formic acid/water) and B (acetonitrile) was used, the gradient program was as follows: 0–2 min 5.0% B; 4–11 min 15–35% B; 15–17 min, 100% B; 17.5–22 min, 5.0% B; flow rate was 0.25 mL min−1, the injection volume was 4 μL. UV detection was performed at 270 and 370 nm, the wavelength was scanned from 200–600 nm. MS was scanned in ESI source in negative mode, mass range: m/z 92–1000; source voltage was 3.5 kV, capillary temperature was 350 °C, sheath gas flow was 35, aux gas flow was 15.0, sweep gas flow was 1.0, and capillary voltage was 43 V. Data acquisition, handling, and instrument control were performed using Xcalibur 2.3.1 software.
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2

Hydrolysis and Conjugation of Cycloamphilectene Amine

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To hydrolyze the amide bond, 10 mg of CALe were dissolved in 10 mL of a solution containing dioxane (50%), H2O (25%) and HCl 1 M (25%). The reaction mixture was kept under shaking for 36 h at 100 °C, then lyophilized to remove the solvent, dissolved in ACN and subjected to RP-HPLC separation using an Agilent 1100 Series chromatographer equipped with a Phenomenex C18 column (250 × 4.6 mm). The gradient (solution A: 0.1% TFA, solution B: 0.07% TFA, 5% H2O 95% ACN) started at 15% and ended at 95% B after 45 min at a flow rate of 1 mL min−1. The peak was analysed by mass spectrometry on an LTQ-XL (Thermo Fisher) mass spectrometer.
10 mg (34.8 μmol) of cycloamphilectene amine (CALe–NH2) were incubated with dithiobis-succinimidylpropionate (69.5 μmol) in NaHCO3 (10 mM) containing 30% of ACN for 16 h at 30 °C. After RP-HPLC fractionation, mass spectrometry analysis was carried out on the major product of the reaction using an LTQ-XL (Thermo Fisher) mass spectrometer. The adduct was purified using an Agilent 1100 Series chromatographer equipped with a Phenomenex C18 column (250 ×4.6 mm). The gradient (solution A: 0.1% TFA, solution B: 0.07% TFA, 5% H2O 95% ACN) started at 15% and ended at 95% B after 45 min at a flow rate of 1 mL min−1.
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3

Mass Spectrometry Detection Protocol

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MS detection was carried out using an LTQ-XL ion trap mass spectrometer (LTQ-XL, Thermo Scientific, San Jose, CA, USA). The temperature of the ion transfer capillary was 150 °C. The capillary voltage was 1.0 V. The tube lens voltage was 30.0 V. The pressure of ion trap was 1 × 10–5 torr. High-purity helium (99.999%) was used as the collision gas. The CID-MS experiments were performed by applying excitation alternating current voltage to the end caps of the ion trap to induce collisions of the isolated ions. The CID-MS spectra were obtained by activation of the precursor ions at the normalized collision energy varied from 0% to 50%. Ion detection was done in the positive ion mode. Other LTQ-XL parameters were automatically optimized by the system.
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4

Analytical Characterization of SDRPL Formulation

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RMP content and encapsulation efficiency in the SDRPL formulation was determined using liquid chromatographymass spectrometry (LCMS) (Thermo Scientific, LTQ XL, Germany). Accurately weighed samples of the microparticles were dissolved in 10 ml of methanol followed by centrifugation for 10 min at 10,000 rpm. Subsequently, 1 ml of aliquot was taken from supernatant and analyzed using validated LCMS method. For this analysis, methanol and ammonium acetate buffer system was used in the ratio of 70:30. The Phenomenex C 18 column (250 mm × 4.6 mm, 5 μm) and flow rate was 1 mL/min at ambient temperature. The detection wavelength was 475 nm, and injection volume was 20 μl. Calculations were carried out using the equations shown below:
Solubility Study of SDRPL
The thermodynamic solubility of RMP and SDRPLs was individually studied by adding an excess amount into distilled water in sealed glass vials at 25°C and shaken in shaker water bath (EQUITRON®, Mumbai, India) for 1 h. The obtained dispersion was centrifuged at 1200 rpm for 5 min and analyzed the samples by LCMS (Thermo Scientific, LTQ XL, Germany) as previously described. All experiments were carried out in triplicate.
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5

ESI-MS/MS Analysis of F2 Fraction

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For further confirming the metabolite of F2 fraction and elucidating its molecular structure, the ESI-MS/MS (LTQ XL, Thermo Electron Corporation, Waltham, MA, USA) analysis was carried out by following the protocol described earlier [36 (link)] with a few minor modifications. Briefly, 2 mg of fraction F2 was dissolved in 1 mL of methanol: acetonitrile [80:20, v/v] mixture and run, using direct injection mode at 9 μL/min. The capillary temperature was set at 288 °C. The mass range was selected at m/z 100 to 1000 in positive ionization mode for data acquisition. The collision induced dissociation energy (CID) was manually selected in the range of 5 to 30 eV for obtaining favorable fragmentation. The sheath and auxiliary N2 gases were also adjusted manually. For the data analysis and structural elucidation, Xcalibur™ (version 3.0, Thermo Fisher Scientific, Waltham, MA, USA) and ChemDraw (version Chem Draw Ultra 8.0, PerkinElmer, Waltham, MA, USA) software were used.
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6

LC-MS/MS-based Metabolite Analysis

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LC-MS/MS (LTQ XL, Thermo Electron Corporation, Waltham, MA, USA) and Xcalibur 2.2 software (Thermo Fisher Scientific, Waltham, MA, USA) were purchased from Fisher Scientific (Illkirch, France). The solvents used for liquid chromatography were LC-MS grade acetonitrile (Fisher Scientific). Deionized water was purified by a Milli-Q (Millipore, Bedford, MA, USA) water purification system.
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7

LC-MS Identification of Bioactive Compounds

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We performed mass spectral analysis on RP-HPLC subfractions that have exhibited significant antioxidant and anti-inflammatory activity using LC-ESI-MS/MS (LTQ XL, Thermo Electron Corporation, Walthan, MA, USA) for tentative identifications of bioactive components according to the protocols suggested by Steinmann and Ganzera [44 (link)]. An online software was used to obtain the structures of bioactive compounds identified in the present study and to compare them with previously published data (www.chemspider.com, accessed on 6 October 2021).
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8

Proteomic Analysis of Endothelial Cells

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The proteins were obtained by mass spectrometry from EA-hy926 and dermal microvascular endothelial cells according to protocols described in [7 (link)]. Shortly, both types of cells had been grown either within a monolayer under normal 1g laboratory conditions or exposed to an RPM, where one part remained adherent (AD cells) while the other one formed three-dimensional tubular aggregates (tube cells). Monolayer cells cultured under 1g, AD cells, and tube cells were harvested and pelleted in separate samples. Each cell sample was lysed by sonication. Then, soluble proteins and remaining cell fragments were separated by centrifugation. Both fractions were subjected to free flow electrophoretic separation. The resulting fractions were subjected to SDS page and stained. Bands of interest were cut out and forwarded to mass spectrometry, which was performed using an UltiMate 3000 nano-LC system (Dionex, Idstein, Germany) coupled to an ESI-linear ion trap (LTQ XL, Thermo Electron, Karlsruhe, Germany), as described in [140 (link)].
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9

Metabolite Profiling of TBM and MET by ESI-MS/MS

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Metabolites
of TBM and MET produced during biodegradation were
determined by ESI-MS/MS (Model: LTQXL-Thermo Electron Corporation).
The samples were extracted with methylene dichloride twice, dissolved
in acetonitrile (LC–MS grade purity) and filtered through a
poly(tetrafluoroethylene) (PTFE) membrane syringe filter (0.45 μm)
before injecting them using a direct syringe pump to the mass spectrometer.
The analysis of TBM and MET metabolites was done using mass spectrometry
at a normal mass range from m/z 50
to 1000, and the mass spectra were recorded using electrospray ionization
(ESI) probe in both positive and negative ion modes. The system was
run on full scan as well as ion isolation mode to conduct selective
ion monitoring (SIM). Further tandem mass spectrometry was conducted
using various energies, ranging from 10 to 45 mV. The data obtained
was processed using X-calibur software. The chemical structures (parent
and daughter ion peaks) were drawn using ChemBioDraw Ultra 8.0 software.
The compounds were identified by manually correlating their finger
print fragmentation patterns with reference standards and published
data.
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10

Fungal Antioxidant Compounds Profiling

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The fungal culture having the ability to exhibit antioxidant activity, were further evaluated by LC MS/MS (LTQ XL, Thermo Electron Corporation, U.S.A.) for the presence of bioactive compounds [35 (link)]. The detection was performed through direct injection mode with Electron Spray Ionization (ESI) probe, at a positive-mode. The capillary temperature was kept at 280°C, while the sample flow rate was set at 8 μl/min. The mass range was selected from 50 to 1000 m/z. The collision-induced dissociation energy (CID) during MS/MS was kept in the range of 10–45, depending upon the nature of the parent molecular ion. As a mobile phase, the ratio of methanol and acetonitrile was 80:20 (v/v) for the HPLC fractionation. The MS parameters for each compound were optimized to ensure the most favorable ionization, ion transfer conditions. The optimum signal of both the precursor and fragment ions was attained by infusing the analytes and manually tuning the parameters. The source parameters were identical for all of the analytes.
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