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82 protocols using tcs sp8 laser confocal microscope

1

Immunofluorescence Imaging of Fixed and Live Cells

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Immunofluorescence was performed by combining the methods described in previous researches.10 (link),45 (link) Briefly, the fixed cells were permeated by 0.5% PBST (Triton X-100) and blocked in 1% BSA, followed by incubating with first and second antibodies. A DM6 microscope (Leica Microsystems) or a TCS SP8 laser confocal microscope (Leica Microsystems) was used for imaging. For confocal microscopy, 63×, 1.4 NA oil objective lenses (Leica Microsystems) was used, and the cells were imaged by scanning optical sections at ∼0.5-μm intervals. 3D reconstruction was according to confocal microscopy which scaned cell from the top to the bottom of cells based on DAPI fluorescence at ∼0.3-μm intervals, and reconstructed by LAS X software. For live-cell imaging, cells stably expressed mCherry-H2B were plated on a glass-bottom dish and first synchronized to prometaphase followed by 1 h of live photograph. Images were acquired by TCS SP8 laser confocal microscope (Leica Microsystems).
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2

Visualizing Transgenic Tobacco Root Cells

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The root tips of 2-week-old transgenic tobacco (pROKII-PsnCYCD1;1-GFP) seedlings were collected and flatten on a glass slide for microscopic observation. The wild-type and transgenic tobacco with a pROKII-GFP vector was used as control. The green fluorescent signals in cells were observed and photographed by Leica TCS SP8 laser confocal microscope (Leica, Wetzlar, Germany).
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3

Multicolor Fluorescence Labeling of Neutrophils

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90 µl of paraformaldehyde fixed cells was incubated with 5 × 10−7 M DAPI and 1:100 Vybrant™ DiD Cell-Labeling Solution (Invitrogen) at 37°C for 20 min. Samples were centrifuged at 2000 g × 1 min. They were washed with 1 ml PBS and sprun at 2000RPM x 3 min twice. Finally, they were resuspended in 80 µl PBS then dropped on cavity slides (Eisco), covered with coverslips (FisherScientific), and analyzed with Leica TCS SP8 Laser confocal microscope. Visualization of neutrophils was performed with water immersion objective HC PL APO CS2 40x/1.10. Images were obtained in sequential scanning mode using Diode 405, OPSL 488, OPSL 552 and Diode 638 lasers. We used scan speed 200 Hz and pixel size 0.223 µm for flat images. Z-stacks were obtained with scan speed 600 Hz, XY pixel size 0.223 µm and voxel size 0.424 µm. Images and Z-stacks were processed with LASX (Leica microsystems). Images and Z-stacks were converted to TIFF images for analysis in ImageJ (FIJI distribution 2.1.0/1.53q). Processing and analysis, including image thresholding, fluorescence colocalization, and per-cell analysis of fluorescence signals, employed custom ImageJ macros, code for which is provided in full in the supplement. For per-cell analyses, regions of interest were drawn manually around each imaged cell, using images of DiD membrane stain to define the edges of individual cells.
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4

Transient Expression of MAX Genes

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CDSs of NtMAX2, NtMAX3, and NtMAX4 were each cloned with the stop codon removed, then inserted into the PYG57 vector using the restriction enzymes SacI and SpeI. The recombinant vectors and empty plasmid were each transformed into Agrobacterium tumefaciens EHA105. Four-day-old leaves of Nicotiana benthamiana were inoculated with transformed Agrobacterium EHA105 via needle prick. Plants were then incubated continuously at 28 °C with a 16/8 h light/dark cycle. Leaves were photographed using a Leica TCS SP8 laser confocal microscope (Leica, Mannheim, Germany).
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5

In Situ Apoptosis Detection by TUNEL Assay

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TUNEL staining was used to determine in situ apoptotic cells; 5 μm thick samples of tissue sections were used for the TUNEL apoptosis detection. This was done using the One Step TUNEL Apoptosis Assay Kit (Beyotime Biotech, Beijing, China) following the manufacturer's instructions. The cell level of apoptosis was detected by the Leica-TCS SP8 laser confocal microscope (200∗ amplification; Leica, Germany). Apoptotic cell death, noted in red, was quantitatively analyzed by counting TUNEL-positive cells selected randomly from 10 fields. Results were presented as TUNEL-positive cells per 103 cells.
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6

Visualizing Circ6401 and miR-29b-1-5p Interaction

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Circ6401-overexpressing WJ-MSCs were transfected with miR-29b-1-5p mimics. After transfection, the cells were hybridized with a circ6401 probe (cy3-labeled) and an miR-29b-1-5p probe (FITC-labeled). Finally, the slides were stained with DAPI (Cell Signaling Technology, Boston, MA) and subjected to fluorescence signal detection under a Leica TCS SP8 laser confocal microscope (Leica). Sequences of FISH probes are shown in Additional file 2: Table S2.
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7

Localization of lncRNA TBX5-AS1:2 in Cells

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Cells were grown in a 4‐chamber slides for 24 hours, fixed with 4% paraformaldehyde for 20 minutes and dehydrated in an ascending series of ethanol solutions. Cells were hybridized overnight at 42°C with probe. Non‐specific probe was removed using 0.5× saline sodium citrate containing 50% formamide at 37°C. Biotin‐labelled lncRNA TBX5‐AS1:2 was detected using anti‐biotin monoclonal antibody and secondary antibody. Finally, the slides were stained with DAPI (Cell Signaling Technology) and subjected to fluorescence signal detection under Leica TCS SP8 laser confocal microscope (Leica).The probe of lncRNA TBX5‐AS1:2 used was as follow:
CY3‐GGUUUCGAUUAAGAUACACCAUAGGCUCUACACGAUCGGC.
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8

Circ6401 and miR-29b-1-5p Localization

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Circ6401-overexpressing WJ-MSCs were transfected with miR-29b-1-5p mimics. After transfection, the cells were hybridized with a circ6401 probe (cy3-labeled) and an miR-29b-1-5p probe (FITC-labeled).
Finally, the slides were stained with DAPI (Cell Signaling Technology, Boston, MA) and subjected to uorescence signal detection under a Leica TCS SP8 laser confocal microscope (Leica). Sequences of FISH probes are shown in Additional le 2 Table S2.
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9

Circ6401 and miR-29b-1-5p Localization

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Circ6401-overexpressing WJ-MSCs were transfected with miR-29b-1-5p mimics. After transfection, the cells were hybridized with a circ6401 probe (cy3-labeled) and an miR-29b-1-5p probe (FITC-labeled).
Finally, the slides were stained with DAPI (Cell Signaling Technology, Boston, MA) and subjected to uorescence signal detection under a Leica TCS SP8 laser confocal microscope (Leica). Sequences of FISH probes are shown in Additional le 2 Table S2.
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10

Circ6401 and miR-29b-1-5p Localization

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Circ6401-overexpressing WJ-MSCs were transfected with miR-29b-1-5p mimics. After transfection, the cells were hybridized with a circ6401 probe (cy3-labeled) and an miR-29b-1-5p probe (FITC-labeled).
Finally, the slides were stained with DAPI (Cell Signaling Technology, Boston, MA) and subjected to uorescence signal detection under a Leica TCS SP8 laser confocal microscope (Leica). Sequences of FISH probes are shown in Additional le 2 Table S2.
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