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8 protocols using a10523

1

Immunohistochemical Analysis of Neuronal Subtypes

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To mark PCs, brain sections were incubated with a rabbit anti-calbindin D28K antibody (1:1000, PA1-931, Invitrogen, Waltham, MA) at 4 °C for 24–48 h. After being washed in PBS, sections were incubated with a goat anti-rabbit Cy5 (1:500, A10523, Invitrogen) at room temperature for 3 h. After another rinse with PBS, sections were mounted on slides and cover-slipped with a mounting medium (H-1500, Vector Labs). To identify subtypes of c-Fos positive neurons following the social recognition test, sections were incubated with primary antibodies of guinea pig anti-c-Fos (1:1000, 226308, Synaptic Systems, Gottingen, Germany), rabbit anti-CaMKII (1:200, PA5-99558, Invitrogen) and mouse anti-GAD67 (1:500, MAB5406, Millipore, Burlington, MA) at 4 °C for 24–48 h. After being washed in PBS, sections were incubated with secondary antibodies of goat anti-guinea pig Alexa 488 (1:1000, A11073, Invitrogen), goat anti-rabbit Alexa 555 (1:1000, A21428, Invitrogen) and goat anti-mouse Alexa 647 (1:1000, A21236, Invitrogen) at room temperature for 3 h. After another rinse with PBS, sections were mounted on slides and cover-slipped with a mounting medium (H-1500, Vector Labs). Images were taken with a Zeiss LSM 710 confocal microscope and Zen 2.0 software (Oberkochen, Germany).
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2

Histological Analysis of Iris Tissue

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Enucleated eyes were fixed in Davidson`s fixative overnight and dehydrated through graded ethanol steps, and embedded in paraffin according to standard protocols. Five micrometer thick sections were deparaffinized, rehydrated to PBS, and stained with Hematoxylin and Eosin (H&E) or Periodic acid–Schiff (PAS) reagents. To visualize the tissue structure of the iris, a de-pigmentation step was included, prior to staining, by treating the rehydrated slides with 10% hydrogen peroxide in PBS overnight. For immunofluorescence staining, an antigen retrieval step was performed by boiling the slides in citrate buffer for 10 minutes. The following primary antibodies were used: rabbit anti-collagen IV (Invitrogen, PA185320), rabbit anti-LOXL1 (Novus Biologicals, NBP182827), mouse anti-fibrillin (Millipore, MAB2641). Antibody detection was performed with Cy5 labeled goat anti-rabbit IgG (Invitrogen, A10523) and goat anti-mouse IgG (Invitrogen, A10524). Fluorescent images were taken using a Leica confocal microscope under 63x oil objective lens.
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3

Quantifying VAMP2 Cleavage in BA-NAc Neurons

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VAMP2 integrated density in BA–NAc neurons was analysed as a marker of TeTxLC cleavage efficacy. In the 12 TeTxLC mice and 6 mice from each control group, two coronal sections at bregma −1.8 mm underwent immunofluorescence staining using rabbit anti-VAMP2 as primary antibody (1:1000; Ab3347, Abcam) and Cy5 goat anti-rabbit (1:500; A10523, Invitrogen) as secondary antibody. For protocol details, see “Brain histology, injection site validation and immunofluorescence staining”. For each hemisphere per section, an image comprising the entire BA was acquired using a confocal laser scanning microscope at ×20 magnification (for details, see the section “Microscopy”). Separate laser channels were used for VAMP2 (647 nm), eGFP (488 nm), mCherry (555 nm) and DAPI (405 nm). In control mice and TeTxLc mice, respectively, mCherry and EGFP were used to identify BA-NAc neurons and the area where the fluorescent signal was most intense was used for VAMP2 quantification. Working with the images and Fiji ImageJ, representative images were used to create a region of interest (ROI) that corresponded to the typical area covered by fluorescently labelled BA-NAc neurons. This same ROI was then applied to each BA and its mean integrated density for VAMP2 was calculated as the product of mean grey value × area.
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4

Immunofluorescence and Western Blot Antibody Protocols

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The following antibodies were used for immunofluorescence: guinea pig anti-insulin (A056401, Dako, 1:1000), rabbit anti-phospho-CREB (Ser133) (9198, Cell Signaling, 1:250), rabbit anti-Oxytocin (T-4084, Peninsula Laboratories, 1:1000), mouse anti-V5 tag (R960-25, Invitrogen, 1:250), goat anti-guinea pig conjugated to Alexa Fluor 488 (A11073, Invitrogen, 1:500), goat anti-rabbit conjugated to Cy5 (A10523, Invitrogen, 1:500), and goat anti-mouse conjugated to Alexa647 (115-605-003, Jackson ImmunoResearch, 1:500). The following antibodies were used for Western blot: mouse anti-V5 tag (R960-25, Invitrogen, 1:5000), goat anti-IgSF8 (AF3117, R&D Systems, 1:500), mouse anti-Alpha-synuclein (610786, BD Biosciences, 1:500), rabbit anti-Beta-arrestin (ab32099, Abcam, 1:1000), rabbit anti-c-Raf (53745, Cell Signalling, 1:500), rabbit anti-GAPDH (2118, Cell Signalling, 1:1000), goat anti-rabbit conjugated to HRP (401393, Sigma, 1:10,000), rabbit anti-goat conjugated to HRP (401515, Sigma, 1:10,000), and goat anti-mouse conjugated to HRP (401253, Sigma, 1:10,000).
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5

Internalization of NMDA Receptors

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After incubation with rabbit antibodies, HEK293T cells were washed with PBS, and reacted with second antibodies [Cy5 goat anti-rabbit IgG (H + L) at 2 mg/ml, 200 fold-dilution (Invitrogen A10523)] for 40 min at 37 • C. Thereafter, HEK293T cells were washed with PBS, and then fixed in PBS containing 10% paraformaldehyde at room temperature for 20 min. Then, 6-diamidino-2-phenylindole (DAPI) was added for nuclear staining. Serial optical sections (z-stack) collected by laser confocal microscopy (C2, NIKON, Tokyo, Japan) were used to assess the internalization of NMDA-type GluRs (Fig. S1).
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6

Immunofluorescence Analysis of Primary Mouse RPE Cells

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Primary mouse RPE cells were seeded onto Millicell EZ Slides (Millipore, Billerica, MA, USA) under the same experimental conditions as those for the TER and WB experiments. At the experimental endpoint, the samples were mildly fixed in 2% paraformaldehyde (VVR Life Science) for 10 min, permeabilized by incubation in 0.05% Triton X-100 for 10 min and blocked with 2.5% normal goat serum for 1 h at room temperature (RT). The samples were then incubated with primary antibodies (Table 1). After PBS-T washing, they were then visualized by goat anti-rabbit IgG (H + L), Cyanine5 (A10523, 1:1000; Thermo Fisher), goat anti-rabbit IgG (H + L), Alexa Fluor 488 (A-11034, 1:1000, Thermo Fisher), and goat anti-mouse IgG (H + L), Cyanine5 (A10524, 1:1000, Thermo Fisher). The cell nuclei were visualized by incubation with 4′,6-diamidino-2-phenylindole (DAPI); (1:5000; Sigma). The slides were mounted with a ProLong Diamond antifade reagent (Thermo Fisher).
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7

Visualizing Cre-Expressing Neurons via AAV Transduction

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Expression was achieved through intracranial injection of AAVs (5×1012 GC/mL Optopatch + 1011 GC/mL hSyn-Cre) in P0 - P2 wild-type C57BL/6J pups. Coronal slices were prepared with the injected pups 21 days after virus injection. The slices were fixed in 1% paraformaldehyde for 3 - 4 hours and immunostained to visualize the HA tag (primary antibody: HA Tag recombinant rabbit monoclonal antibody, ThermoFisher, RM305, 2,000× dilution; second antibody: goat anti-Rabbit IgG (H+L) cross-adsorbed secondary antibody conjugated with Cyanine5, ThermoFisher, A10523, 500× dilution). The mounted slices (VECTASHIELD® Antifade Mounting Medium H-1000, Vectorlabs, H-1000-10) were imaged on LSM880 Airyscan (exc. 488 nm for EGFP; exc. 635 nm for Cy5).
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8

Immunostaining for IRF1 and pSTAT1 in MSCs

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MSCs were plated in 6 well plates containing coverslips, cultured for 24 hours, and fixed with 4% PFA in PBS for 20min at 4–8°C. Cells were washed thoroughly with 0.2μm filtered 5% BSA in PBS (blocking solution), and permeabilized by incubation in 0.2% Triton-X-100 in PBS at room temperature for 5min. After washing and incubating with blocking solution for 1 hour, cells were immuno-stained overnight at 4–8°C with rabbit anti-human IRF1 antibody (1:1000, ab243895, Abcam, Cambridge, UK) or rabbit anti-human pSTAT1 (1:400, MA5–15071, Thermo, Waltham, MA) and mouse anti-human STAT1 (1:800, 66545-1, Proteintech, Rosemont, IL) diluted in blocking buffer. Secondary antibody staining was performed using Cy5 Goat anti-rabbit (1:500, A10523, Thermo, Waltham, MA), AF 594 donkey anti-rabbit (1:500, A21207, Invitrogen, Waltham, MA), or AF 647 goat anti-mouse (1:500, A21235, LTC, Carlsbad, CA). Secondary staining solutions also contained Hoechst nuclear stain (1:10,000, 33342, Thermo, Waltham, MA). Cells were visualized with a Nikon Eclipse Ti2 at 60x magnification. Background subtraction was done using ImageJ and was performed identically for each fluorophore.
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