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22 protocols using basic fgf

1

Culturing Melanoma Spheres for Differentiation

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For the culture of melanoma spheres, cells from FM82 empty vector, FM82 PMLII, FM82 and FM55 controls and FM82 and FM55 shRNAs were cultured at clonal density (1 × 104 cells/ml in 24-well plates) in a DMEM/F12 media (Gibco Invitrogen, Paisley, UK; 32 500) supplemented with N-2 Max Media (R&D Systems, Minneapolis, MN, USA; AR009), and daily addition of 100 ng/ml FGF basic and 100 ng/ml EGF (both from Sigma) for a 10-day culture period.2 The differentiation of melanoma spheres was induced by the withdrawal of FGF basic and EGF. The cells were stained by IF as described above. For IFNα studies, the melanoma spheres were cultured for 15 days and IFNα (1000 U/ml) was added at day 9 and 12. Sphere diameters were measured using Carl Zeiss AxioVision software.
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2

Culturing Single HCC Cells into Spheres

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A total of 500 single HCC cells were plated onto 24-well poly-HEMA-coated plates (Sigma-Aldrich, Shanghai, China). The cells were cultured for 3–4 weeks in DMEM/F12 medium (Invitrogen, Shanghai, China) supplemented with 4 mg/mL insulin (Sigma-Aldrich, Shanghai, China), B27 (1:50, GIBCO, Shanghai, China), 20 ng/mL EGF (Sigma-Aldrich, Shanghai, China) and 20 ng/mL basic FGF (Sigma-Aldrich, Shanghai, China). For serial passage of primary spheres, the primary spheres were collected, subsequently dissociated with trypsin and resuspended in DMEM/F12 medium with the above supplements. The surviving colonies were measured depending on their diameter, and the data are expressed as the mean ± SD of triplicate wells within the same experiment.
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3

Conditional Expression of Pgp in hCMEC/D3 Cells

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Human brain endothelial cells (hCMEC/D322 (link)) were kindly provided by Dr. Pierre-Olivier Couraud, Institut COCHIN, Paris, France. In addition, conditional doxycycline-inducible Pgp-EGFP and EGFP expressing hCMEC/D3 cells were produced as described previously in detail21 (link). In co-culture experiments (see below), hCMEC/D3-MDR1-EGFP cells served as Pgp-donor cells while hCMEC/D3 cells served as Pgp-recipient (or “wildtype”) cells. Cells were cultivated in endothelial cell basal medium-2 (EBM-2, Lonza, Cologne, Germany) supplemented with 5% fetal calf serum (PAA Laboratories, Cölbe, Germany), 1% penicillin (100 U/ml), streptomycin (100 μg/ml) (Invitrogen, Karlsruhe, Germany), 1.4 μM hydrocortisone (Sigma-Aldrich, Munich, Germany), 5 μg/ml ascorbic acid (Sigma-Aldrich), 1% lipid concentrate (Invitrogen), 10 mM HEPES (Invitrogen) and 1 ng/ml basic FGF (Sigma-Aldrich).
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4

Cell Line Establishment and Authentication

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Standard cell lines U-251 MG, T98G, U-87 MG, LN-18, SF268, and GP2 were cultured in DMEM media (Sigma-Aldrich) supplemented with 10% FBS, 100 U/mL penicillin, and 100 μg/mL streptomycin (Gibco). DNA fingerprinting was performed for authentication of the cell lines (data available upon request). Human GBM tumorspheres H543, H516, and H676 were cultured in human NeuroCult NS-A Proliferation Kit (Stem Cell Technologies, Catalog No. 05751) and supplemented with 10 ng/mL recombinant human EGF (Gibco, Catalog No. PHG0313), 20 ng/mL basic-FGF (Sigma-Aldrich, Catalog No. F0291–25UG), 1 mg/mL heparin (Stem Cell Technologies, Catalog No. 07980), 100 U/mL penicillin, and 100 μg/mL streptomycin. Cells were incubated at 37°C, 5% CO2 with humidity. Both established and GBM tumorsphere lines were kindly provided by Eric Holland. All the cell lines were routinely checked for Mycoplasma contamination by PCR analysis.
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5

Culturing Human Brain Endothelial Cells

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Cells were maintained in 100 mm culture dishes coated with collagen type I (100 µg/mL). Cells were cultured in endothelial cell basal medium-2 (EBM-2, Lonza, Cologne, Germany) supplemented with 5% fetal calf serum (FCS, PAA Laboratories, Cölbe, Germany), 1% penicillin (100 U/mL), streptomycin (100 µg/mL) (Invitrogen, Karlsruhe, Germany), 5 µg/mL ascorbic acid (Sigma-Aldrich; Munich, Germany), 1% lipid concentrate (Invitrogen), 10 mM HEPES (Invitrogen) and 1 ng/mL basic FGF (Sigma-Aldrich). In addition, 1.4 µM hydrocortisone (Sigma-Aldrich) was included in the medium to reinforce BBB properties [8 (link)]. For induction of Cldn5-YFP expression in Cldn5-YFP-transduced hCMEC/D3 cells, 1 µg/mL doxycycline (Biochrom, Berlin, Germany) was added to the medium during cultivation and the experiments. For monitoring of transendothelial electrical resistance (TEER) cells were seeded in a Transwell® system (6 well format, polyester membrane, 4.67 cm2 growth area, 0.4 µm pore size; Corning Costar Corporation, Cambridge, MA, USA, #3401) at a density of 5 × 104 cells/cm2.
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6

Spheroid Formation Assay Protocol

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Cells were seeded at a density of 1000 cells per well in nonadherent 24‐well culture plates coated with a 10% polyHEMA (Sigma‐Aldrich, St. louis, MO, USA) solution in absolute ethanol and then dried overnight. After seeding, cells were incubated in a serum‐free DMEM‐F12 medium supplemented with 200 ng/mL EGF (Sigma‐Aldrich), 20 ng/mL basic FGF (Sigma‐Aldrich), and B‐27 supplement (Invitrogen). After 5 days of incubation, the number of spheroids in each well was counted under a light microscope (Zeiss, Zena, Germany).
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7

Isolation and Differentiation of Satellite Cells

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Satellite cells (SCs) were isolated by fluorescence-activated cell sorting (FACS) [6 (link)]. Hindlimb muscles of 8-week-old mice were minced and digested with 0.3% type II collagenase (Sigma) for 1.5 h. The cell suspension was filtered through a 70 μm cell strainer (biosharp), and then centrifuged at 600 g for 5 min. The mononuclear cells were suspended in PBS with 3% FBS for fluorescence staining. Cells were sorted and analyzed by flow cytometry. Markers for SCs isolation were CD31, CD45, CD11b, Sca1, CD34+, and Integrin α7 +. Purified SCs were cultured in 24-well plates in Dulbecco’s Modification of Eagle’s Medium (DMEM, Corning) with 20% FBS (Gibco), basic FGF (10 ng/ml, Sigma) and 1% penicillin/streptomycin. Furthermore, when reaching confluence, proliferating cells were incubated with DMEM supplemented with 2% horse serum (Gibco) (differentiation medium, DM) to induce differentiation.
C2C12 cells were purchased from the American Type Culture Collection (ATCC), cultured in DMEM with 10% (v/v) FBS (growth medium, GM). Cells were evenly planked in 6-well plates or 24-well plates with the same cell density, three of which were randomly allocated to control or experimental groups. To induce differentiation, cells were switched into DM after reaching 100% confluence. All cells were cultured in a 37 °C incubator with 5% CO2.
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8

Mitochondrial Function Assay Protocol

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Culture media α-MEM (α-minimum essential medium), DMEM (Dulbecco’s Modified Eagle’s medium), Medium 199, foetal bovine serum, horse serum, Mitosox, prolong diamond antifade mountant, and mitotracker dyes were all purchased from Thermo Fisher Scientific (UK). α-MEM media-lacking glucose was purchased from PAN Biotech, UK, Mitoquinone (Mito Q) was obtained from Cambridge biosciences, UK). BI605906 was a generous gift from Professor Sir Philip Cohen (MRC Protein Phosphorylation Unit, University of Dundee), but also purchased from Tocris (Bristol, UK), MitoSpy™ Green FM was from BioLegends, UK and MitoPYI, Mitotempo, hepatocyte growth factor, dexamethasone, basic FGF, gelatine, vitamin B12, retinoic acid, VAS2870, palmitate, oligomycin, FCCP (carbonyl cyanide p-trifluoromethoxyphenylhydrazone), rotenone, antimycin-A, hygromycin B, apo-transferrin human, SYBR® Green JumpStart Taq Ready Mix, and Polyberen were all purchased Sigma-Aldrich, UK).
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9

Serum-Free Sphere Culture of CC Cells

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A total of 1000 CC cells were plated in ultralow attachment plates. The cells were cultured for 10 days in DMEM/F12 medium (Invitrogen, Shanghai, China) supplemented with 4 mg/mL insulin (Sigma, Shanghai, China), B27 (1:50, GIBCO, Shanghai, China), 20 ng/mL EGF (Sigma, Shanghai, China) and 20 ng/mL basic FGF (Sigma, Shanghai, China). For the serial passaging of primary spheres, these were collected, dissociated with trypsin, resuspended in DMEM/F12 medium with the above supplements, and plated to generate secondary spheroids. The number of spheres was counted under the microscope, and the data are expressed as the mean ± SD of triplicate wells within the same experiment.
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10

Establishing Glioma Stem Cell Cultures

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Patient-derived GNS166, GNS179, and GNS144 glioma stem cell lines, kindly provided by Dr. Steven Pollard (18 (link)), were cultured in 2 μg/mL laminin (Sigma-Aldrich)-coated culture plates, and GSC medium consisting of DMEM/F-12 (Sigma-Aldrich) supplemented by N2, B27 (Thermo Fisher Scientific), glucose (Gibco), 100 U/mL penicillin, 100 μg/mL streptomycin, and growth factors (20 ng/mL basic FGF and 20 ng/mL EGF; Sigma-Aldrich). GB2 was generated in the laboratory (19 (link)). Glioma cell lines U87MG (U87), U251MG (U251), U373MG (U373), T98G (T98), and A172 were purchased from the ATCC and cultured in DMEM (Gibco), supplemented with 10% FBS (Gibco), 100 U/mL penicillin, and 100 μg/mL streptomycin for monolayer cultures and in GSC medium for oncosphere cultures. Cells were maintained at standard conditions of 37°C and 5% CO2 in humidified atmosphere. TMZ (Sigma) and QX77 (MedChemExpress) were dissolved in DMSO.
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