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9 protocols using icbp112

1

MTT Assay for Cell Viability

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Cell lines were treated for 2 days with 10 μg/ml TSA (Sigma) and 0.5 μM ICBP112 (Sigma) which have been dissolved in dimethylsulfoxide, and subsequently prepared for standardized MTT (3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide; obtained from Sigma) assays. The measurement was performed twice in triplicates. The absorbance was determined at 540 nm and at 620 nm as background control using ELISA reader Multiskan EX (Thermo Electron, Vantaa, Finland).
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2

Cytokine-Induced Gene Regulation Assay

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Cytokines (R&D systems) were reconstituted in PBS 0.1% BSA. Treatment durations and final concentrations were optimized and set at 2 h for the lowest concentrations leading to maximal gene induction (IL-1β and IL-6 at 10 ng ml−1, TNF at 2 ng ml−1). p300/CBP inhibitors C646, SGC-CBP30 and I-CBP112 (Sigma, Cat# SML0002, SML1133 and SML1134 respectively) were reconstituted in DMSO and treated at a final concentration of 35 µM 20 min. prior to cytokine treatment. STAT3 inhibitor (BP-1-102, Sigma, Cat# 573132) was reconstituted with DMSO and treated at a final concentration of 30 µM 20 min. prior to cytokine treatment. Adenoviral vectors targeting AP-1, NF-κB and CEBPB (Vector Biolabs, Cat# 1046, 1028 and shADV-255244, respectively) were added to hepatocytes 4 h after plating (18 h prior to cytokine treatments) at a final concentration of 106 pfu per 35 mm well (for qPCR) or 1006 pfu per 15 cm plate (for ChIP)
Antibodies used: STAT3, p65 and CEBPB (Santa Cruz biotechnology, sc-482X, sc-372X, sc-150X, respectively), GAPDH and RNAP II (Abcam, Cat# ab8245 and ab5131, respectively), cJun and phospho-STAT3 Tyr705 (Cell Signaling Technologies, Cat# #9165 and #9145, respectively) and H3K27ac (Active motif #39133).
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3

Manipulation of T-ALL Cell Lines

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T-ALL cell lines are held by the DSMZ (Braunschweig, Germany) and were cultivated as described previously [64 ]. PER-117 cells were kindly provided by Dr. Ursula Kees (Perth, Australia) [65 (link)]. Treatments of cell lines were performed for 20 h with 5 μM 3-Deazaneplanocin A hydrochloride (DZNep) (Sigma, Taufkirchen, Germany), 10 μg/ml Trichostatin A (TSA) (Sigma), indicated concentrations of ICBP112 (Sigma), or 20 ng/ml recombinant human Interleukin-7 (IL7) protein (R&D Systems, Minneapolis, MN, USA). Gene specific siRNA oligonucleotides and AllStars negative Control siRNA (siControl) were obtained from Qiagen. Expression constructs for AUTS2, PCGF5 and RUNX1 were obtained from Origene (Wiesbaden, Germany). SiRNAs (80 pmol) and expression constructs/vector controls (2 μg) were transfected into 1×106 cells by electroporation using the EPI-2500 impulse generator (Fischer, Heidelberg, Germany) at 350 V for 10 ms. Electroporated cells were harvested after 20 h of cultivation. Lentiviral transduction of the STAT5 gene into JURKAT cells was performed as described previously [28 (link), 66 (link)].
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4

Modulatory Effects on Hematological Cell Lines

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HL-cell lines HDLM-2, KM-H2, L-428, L-540, L-1236, SUP-HD1, U-HO1 and AML cell line THP-1 are held by the DSMZ (Braunschweig, Germany) and cultivated as described [70 ]. Cell stimulations were performed for 16 h by treatment with 20 ng/ml recombinant human proteins IGF1, IFNG, IL2, IL6, IL7, IL12, IL21, IL22 or IL23 (R&D Systems, Wiesbaden, Germany), with inhibitory antibodies directed against IGF1, IFNGR1, IFNGR2, IL7, IL22 (R&D Systems), with 10 or 100 nM 5-Azacytidine (AZA, Sigma, Taufkirchen, Germany), 5 μM DZNep (Sigma), 10 μg/ml Trichostatin A (TSA, Sigma), 50 μM Resveratrol (Sigma), 0.5 μM ICBP112 (Sigma), 1 μM Epinephrine (Sigma), 1 μM Propranolol (Sigma), Doxorubicine (Sigma), AG490 (Sigma), and Etoposide (Sigma). Gene specific siRNA oligonucleotides and AllStars negative Control siRNA (siControl) were obtained from Qiagen (Hilden, Germany). Expression constructs for HLX, MSX1, STAT3, and GFP-tagged STAT3 were obtained from Origene (Wiesbaden, Germany). SiRNAs (80 pmol) and expression constructs/vector controls (2 μg) were transfected into 1 × 106 cells by electroporation using the EPI-2500 impulse generator (Fischer, Heidelberg, Germany) at 350 V for 10 ms. Transfected cells were harvested after 20 h cultivation.
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5

Compound Treatment on BCLs

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BCLs were continuously treated for 72 h in adherent conditions with bortezomib (stock concentration SC = [10 mM], Selleckchem), carfilzomib (SC = [10 mM], Selleckchem), chloroquine (SC = [10 mM], Selleckchem), Cortistatin A (SC = [100 μM], a kind gift from Prof. P. Baran, The Scripps Research Institute, La Jolla, CA, USA), docetaxel (SC = [10 mM], GSK343 (SC = [1 mM], Active Biochemicals Co), I‐CBP112 (SC = [10 mM], Sigma), JQ1 (SC = [10 mM], Selleckchem), mifepristone (SC = [10 mM], Selleckchem), Ro5‐3335 (SC = [10 mM], Calbiochem), ruxolitinib (SC = [10 mM], Selleckchem), SGC‐CBP30 (SC = [10 mM], Selleckchem), salinomycin (SC = [200 μM], Selleckchem), spliceostatin A (SC = [10 mM], Adooq Biosciences), tazemetostat (SC = [5 mM], Selleckchem), and 8‐AZA (SC = [100 mM], Chembiotech). All these compounds were resuspended in dimethyl sulfoxide (DMSO; Sigma), except for chloroquine resuspended in H2O. For the in vivo experiments, salinomycin (SC = [6 mg/ml], Medchemexpress) and JQ1 (SC = [100 mg/ml], Medchemexpress) were resuspended in a solution of DMSO/(2‐Hydroxypropyl)‐β‐cyclodextrin (HPCD) 10% (1:9, v/v).
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6

Plasmid Construction and Protein Expression

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FBP1 wildtype (wt) and FBP1 mutant (G260R) constructs were kindly provided by Dr. Haojie Huang from the Mayo Clinic [11 (link)]. The pCMV4a-Flag-c-Myc plasmid was purchased from Addgene. FBP1 nes mutants were generated by adding a nuclear export sequence (LALKLAGLDIGS) to the FBP1 c-terminal using the KOD-Plus- Mutagenesis Kit (Toyobo, Japan). Bacterial expression vectors for GST-TRIM28 recombinant proteins were generated using the pGEX-4 T-1 backbone vector. FBP1 antibody (ab109732)was purchased from Abcam (working dilution 1:1000); beta-Tubulin (2128S) was from Cell Signaling Technology - (working dilution 1:5000); TRIM28 (ab10483) was from Abcam (working dilution 1:3000); c-Myc (5605P) was from Santa Cruz Biotechnology (working dilution 1:1000); BRD2 (ab139690) was from Abcam (working dilution 1:1000); BRD3 (A302-368A) was from Bethyl Laboratories (working dilution 1:1000); BRD4 (ab128874) was from Abcam (working dilution 1:1000). JQ1, MG132, I CBP112, puromycin and cycloheximide (CHX), were purchased from Sigma-Aldrich (Shanghai, China); MK 2206, Trametinib, GSK126, Ku55933, SB203580 and Palbociclibwere from Selleckchem (Houston, USA). Gemcitabine was obtained from Eli Lilly and Company (Indianapolis, USA). Helenalin was purchased from Cayman Chemical (Ann Arbor, USA).
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7

Synthesis and Characterization of CPI203

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The synthesis and characterization of CPI203 have been published previously (Devaiah et al., 2012 (link)). SGC-CBP30 and I-CBP112 are commercially available (Sigma).
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8

Characterization of NK Cell Lines

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NK-cell lines KHYG-1, NK-92, NKL and YT have been reviewed by Drexler & Matsuo [16 ]. Together with T-cell lines JURKAT and LOUCY they are held by the DSMZ (Braunschweig, Germany). The NK-cell line IMC-1 was kindly obtained from Dr. I. Ming Chen (Albuquerque, NM, USA) and NK-cell line SNK-6 from Dr. N. Shimizu (Tokyo, Japan) [44 , 72 ]. These NK-cell lines tested all CD3-negative and CD56-positive. Cell lines were cultivated as described elsewhere [73 ]. Cell stimulations were performed by treatment with recombinant human BMP4 for 16 h at a concentration of 20 ng/ml (R&D Systems, Wiesbaden, Germany), 10 μg/ml Trichostatin A (TSA) (Sigma, Taufkirchen, Germany), and 0.5 μM ICBP112 (Sigma). Gene specific siRNA oligonucleotides, AllStars negative Control siRNA (siControl) and miRNA-Mimics were obtained from Qiagen (Hilden, Germany). Expression constructs for GATA3, HHEX, IRF4, MSX1, PCGF5 and PRDM1 were cloned in vector pCMV6 and obtained from Origene (Wiesbaden, Germany). SiRNAs (80 pmol), miRNA-Mimic for miR155 (80 pmol), and expression constructs/vector controls (2 μg) were transfected into 1×106 cells by electroporation using the EPI-2500 impulse generator (Fischer, Heidelberg, Germany) at 350 V for 10 ms. Transfected cells were harvested after 20 h cultivation.
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9

Cardiomyocyte Induction from Mouse Embryonic Fibroblasts

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This protocol was modified from previous publication [31] . MEFs were seeded at a density of 10,000 cells/cm 2 and let to attach overnight. The next day, virus supernatant containing retrovirus (as described above) was added to the cells for two consecutive days. The day after, media was changed to cardiomyocytes induction media consist of StemPro-34 SFM supplemented with 1% GlutaMAX, 1 X ITS-X (Thermo Fisher), 50 μg/mL ascorbic acid (Sigma), 10 ng/mL FGF2, 50 ng/mL FGF10 and 5 ng/mL VEGF (Miltenyi Biotec). Media was changed every 3-4 days. Compounds or small molecules that were used are DMSO (Sigma), ethanol (Sigma), SB431542 (Tocris), suberanilohydroxamic acid (SAHA) (Sigma), hexamethylene bisacetamide (HMBA) (Sigma), (+)-JQ1, (-)-JQ1, I-BET 762, RVX-208, C646, CBP30, I-CBP112 and human TGF-β1 (Sigma) (all from Cayman Chemical unless specified otherwise). Stock for all small molecules were prepared in DMSO, expect for C646, CBP30 and I-CBP112, where they were prepared in ethanol, unless specified otherwise. Treatment of DMSO and all small molecules were carried out for 14 days, unless specified otherwise.
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