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Superrt cdna synthesis kit

Manufactured by CWBIO
Sourced in China

The SuperRT cDNA Synthesis Kit is a laboratory tool designed for the reverse transcription of RNA into complementary DNA (cDNA) for subsequent use in various molecular biology applications. The kit includes the necessary reagents and instructions to perform this fundamental step in gene expression analysis and other related research procedures.

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29 protocols using superrt cdna synthesis kit

1

Fungal/Bacterial RNA Extraction and cDNA Synthesis

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Total RNA was extracted from A. tubingensis and A. apis using ZN Fungal/Bacterial RNA Prep (TIANMO Biotech, Beijing, China), and cDNA was synthesized using tagged specific primer (Supplementary Table S3) with super RT cDNA Synthesis Kit (CW Biotech, Beijing, China). The cDNA synthesis mixture was incubated at 42°C for 15 min, followed by 85°C for 5 min to terminate reaction. Then RNase H (Solarbio, Beijing, China) was added into the mixture, which was incubated at 37°C for 30 min to degrade RNA.
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2

qPCR Validation of RNA-seq Data

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The RNA-seq data were verified by qPCR using the same RNA samples used for RNA-seq. The concentration of total RNA was measured using a NanoDrop 2000c spectrophotometer (Thermo Fisher Scientific). One μg of RNA was used as a template from which first-strand cDNA was synthesized using a SuperRT cDNA Synthesis Kit (CWBIO). QPCR was performed using an UltraSYBR Mixture Kit (CWBIO). The total volume of the qPCR mixture was 20 μL containing 10 μL of 2 × UltraSYBR Mixture (High ROX), 0.4 μL of forward primer (10 μM), 0.4 μL of reverse primer (10 μM), 1 μL of cDNA, and 8.2 μL of ddH2O. Reactions were carried out on a Bio-Rad iQ™5 Thermal Cycler (Bio-Rad) with the following reaction conditions: denaturation at 95 °C for 10 min; 40 cycles of denaturation at 95 °C for 15 s, annealing and elongation for 1 min at 60 °C, and a melting curve process from 55 to 95 °C. Nine genes were selected as qPCR-verified targets. The primer sequences for these genes were listed in Additional file 8. Three biological replicates per groups and two technological replicates per sample were included in the qPCR. GAPDH was used as the endogenous reference gene, and the WSD2 group was set as the criterion. Expression levels of genes in each group were presented as expression folds relative to the criterion using the 2-ΔΔCT method [67 (link)].
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3

Quantitative RT-PCR Analysis of Cardiac Gene Expression

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Total RNA of H9C2 cells was isolated using Ultrapure RNA Kit (Cat#: CW0581S, CWBio). 400 ng of RNA was subjected to reverse transcription-PCR with SuperRT cDNA Synthesis Kit (Cat#: CW0741S, CWBio) according to the instruction. Quantitative RT-PCR was performed with PCR primers listed in Table 1. UltraSYBR Mixture Kit (Cat#: CW2602M, CWBio) was employed to detect mRNA levels of these genes. All reactions were repeated 3 times and GAPDH was used to normalize target.

List of utilized primers for qRT-PCR

GeneForward primerReverse primer
β1ARCGACTGCTGGTGCTCGCGTCGAGCGAAAGGGCAGCGTGATGGC
PGC-1αCGCACAACTCAGCAAGTCCTCCCTTGCTGGCCTCCAAAGTCTC
PGC-1βCAAGAAGCGGCGGGAAAGCTCATGTCACCGGAGAGATTT
VEGFGCAGCGACAAGGCAGACTATTACCGTTGGCACGATTTAAGAG
NRF1CCACGTTGGATGAGTACACGCTGAGCCTGGGTCATTTTGT
ERRαAAGCCCTGATGGACACCTCGAAGCCTGGGATGCTCTTG
GAPDHTGGAGTCTACTGGCGTCTTTGTCATATTTCTCGTGGTTCA
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4

RNA Extraction and RNA-seq of Streptomyces-Mesorhizobium Co-culture

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Total RNAs were isolated from monocultured or co-cultured Streptomyces sp. FXJ1.4098 and Mesorhizobium sp. BAC0120 grown on GYM agar at corresponding time points using the QIAGEN Rneasy mini kit, and further purified using RQ1 Rnase-free Dnase I (Promega, USA), according to the manufacturer’s instructions. RNA quality was assessed using a NanoDrop spectrophotometer (ND-1000). Approximately 750 ng of purified RNA was reverse transcribed to generate cDNA using the SuperRT cDNA Synthesis Kit (CWBIO, China). RNA-sequencing (RNA-seq) was performed by Novogene Bioinformatics Technology Co., Ltd on the NovaSeq 6000 platform (Illumina), and paired-end reads of 150-bp length were generated.
Reverse transcription-quantitative polymerase chain reaction (RT-qPCR) was performed using the FastFire qPCR PreMix kit (SYBR Green) and a LightCycler 480 II, according to the manufacturers’ instructions. Moreover, the 16S rRNA gene was used as an internal control with the qBAC-16S-F/qBAC-16S-R primer pair. Three independent biological replicates were analyzed in all RT-qPCR experiments. The data represent the average of three replicates. All primer sequences are listed in Table S4.
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5

Quantification of Relative Gene Expression

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A total of 200 ng of purified RNA was reverse transcribed to cDNA using SuperRT cDNA Synthesis Kit (CWbio.Co., Ltd, China) according to the manufacturer's protocol. SYBR Green (Power SYBR Green PCR Master Mix, Applied Biosystems, Inc.) uptake in double-stranded DNA was measured using the ABI 7900 Real-time PCR System (Applied Biosystems, Inc.). We calculated 2-ΔΔCT and used this statistic to determine relative gene expression. The reference gene was GAPDH. The primer sequences of the target genes in the qPCR analysis are shown in Supplementary Table 3.
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6

RT-PCR Analysis of san7324 and san7324L

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For RT-PCR, 1 μg of RNA was reverse-transcribed to cDNA using a SuperRT cDNA Synthesis Kit (CWBIO, Beijing, China) [43 (link)]. To perform transcriptional analysis of san7324 and san7324L, primer pair (san7324-RT-F: ACGCTGCGGCTGGTGGTCAT, san7324-RT-R: CCGTTCCCTCCCACAGCTTGAT) and another primer pair (san7324L-RT-F: CCCGTCATCAAGCTGTGGGAGG, san7324L-RT-R: TCAGGTGCTGGGCCACGAAC) were respectively used for PCR amplification with cDNAs of WT and ΔwblA as templates. The transcription of hrdB using primers (hrdB-RT-F: GCTGGCCAAGGAACTCGACAT, hrdB-RT-R: CGAAGCGCATGGAGACGACG) was used as an internal control.
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7

Quantitative Gene Expression Analysis

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Total RNA was extracted using the TRIzol reagent (Ambion, Life Technologies, USA), and RNA quality was subsequently assessed using the Infinite M200 PRO NanoQuant absorbance microplate reader (TECAN, Chapel Hill, NC, USA). Reverse transcription was conducted with a SuperRT cDNA Synthesis Kit (CWbio, Beijing, China) and real-time quantitative reverse transcriptase-polymerase chain reactions (qRT-PCR) were performed using the Ultra SYBR Mixture with low ROX (CWbio), as previously described (29 (link)). Gene expression was calculated using the 2−ΔΔCt method and Actb expression was used as the internal control. PCR primer sequences used in qPCRs are listed in Supplementary Table 1 and all assays were performed in triplicate.
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8

LIPUS Stimulation of Chondrocytes

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Cells were seeded at an intensity of 5 × 105 cells/well in 6-well plates. LIPUS treatment was carried out for three continuous days. After 3 h of LIPUS stimulation on the third day, total RNA was obtained using TRIzol reagent and an Ultrapure RNA Kit (CWbiotech, China). cDNA was obtained by reverse transcription using a Super RT cDNA Synthesis Kit (CWbiotech, China) and then was amplified by RT-qPCR using UltraSYBR mix. In this study, β-actin was used as the housekeeping gene and 2−ΔΔCT was used to calculate the relative change in gene expression. The primer sequences used to amplify Sox9, Collagen Ⅱ, MMP3, TIMP1, Aggrecan (Acan), Vegfa, thrombospondin4 (Thbs4), thrombospondin1 (Thbs1), Il1rl1, Glul and β-actin are listed in Table 1.
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9

Quantification of PTDSS1, PTDSS2, and MHV-A59 RNA Levels

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Total RNA was extracted using TRIzol (15596018; Thermo Fisher Scientific), and cDNA was generated by reverse transcription with a SuperRT cDNA Synthesis Kit (CW0741M; CWBIO). Quantitative RT-PCR was performed on an Applied Biosystems 7500 Real-Time PCR System with 2*TSINGKE Master qPCR Mix (TSE201; TSINGKE).
The following primers were used: F-PTDSS1, 5′-AGC​CAG​TCA​TCC​ATT​AAG​TTG​GG-3′; R-PTDSS1, 5′-AGT​AGG​TCT​TTT​CTC​GGT​GAC​C-3′; F-PTDSS2, 5′-ATC​ATC​CTG​GTG​TTC​CTG​TTG​G-3′; R-PTDSS2, 5′-TGT​CCC​GCA​GGA​AGA​AGC-3′; F-MHV-A59 RNA, 5′-TGA​TGA​TGG​TGT​TGT​GTG​TTA​TAA-3′; R-MHV-A59 RNA, 5′-GCA​TTG​TAT​GTT​GAG​AAC​AAA​ATT​C-3′; F-ACTB, 5′-CTG​GCT​CCT​AGC​ACC​ATG​AAG​AT-3′; R-ACTB, 5′-GGT​GGA​CAG​TGA​GGC​CAG​GAT-3′; F-GAPDH, 5′-GAC​AGT​CAG​CCG​CAT​CTT​CT-3′; R-GAPDH, 5′-GCG​CCC​AAT​ACG​ACC​AAA​TC-3′.
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10

Cloning and Sequencing of TaCOPT3D Gene

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The total RNA from the root and shoot tissue was extracted using an RNApure Plant Kit (CwBio, Beijing, China), following the manufacturer’s instructions. A total of 2 μg of RNA was employed to synthesize the first-strand cDNA using a SuperRT cDNA Synthesis Kit (CwBio, Beijing, China). TaCOPT3D was cloned from cDNA using primers designed on the basis of the reference sequence of TraseCS3D02G306300. The high–fidelity DNA polymerase Ex Taq (Takara, Dalian, China) was used to amplify all the required gene products. The amplified fragment was cloned into pMD18-T vector (Takara, Dalian, China) and sequenced. At least three independent clones were sequenced.
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