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5 protocols using 2 deoxy d glucose 2 dg

1

Assessing Mitochondrial Activity and Glycolysis

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Cells sorted by TMRM fluorescence were collected and assessed for ATP production using the ATP Bioluminescence Assay Kit CLS II (Roche). 30,000 cells were collected per biological replicate (n = 3) and each was assayed in technical triplicate so that each assay well had 7,500 cells. L-lactate production was assayed against an L-Lactate standard curve by a Glycolysis Cell-Based Assay Kit (Cayman Chemicals) and results were normalized to cell number. 50 μM 2-deoxy-D-glucose (2-DG, Acros Organics) was added to control cells 24 h prior to analysis. Plates were read on a Synergy H1 plate reader (BioTek).
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2

Activation and Metabolic Regulation of Naive T Cells

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Naïve CD4+ T cells were isolated from fresh human blood samples with a negative selection isolation kit from Miltenyi Biotec as per protocol. The purity of naïve CD4+ T cells was evaluated with staining of anti-CD3 (Clone UCHT1, BioLegend, San Diego, USA), anti-CD4 (clone RPA-T4, BioLegend, San Diego, USA), and anti-CD45RA (HI100, BioLegend, San Diego, USA). Isolated cell purities were over 95% (Supplementary Figure S1). Cells were cultured in RPMI 1640 media (GE Health Care Life Sciences, Marlborough, USA) supplemented with 10% FBS (Life Technologies, Carlsbad, USA). Cells were stimulated overnight with anti-CD3 (10 μg/mL, pre-coated on plate, Clone UCHT1, BD Biosciences, San Jose, USA) and anti-CD28 (2.5 μg/mL, Clone CD28.2, BD Biosciences, San Jose, USA), with and without glycolysis inhibitor 2-deoxy-d-glucose (2-DG, 2 mg/mL, Acros Organics, New Jersey, USA), mTOR inhibitor rapamycin (100 Nm, Alfa Aesar, Ward Hill, USA) or H2O2 (50 μM, Sigma-Aldrich, St. Louis, USA). The next day the antibodies were removed and fresh media (RPMI and 10% FBS) were added with and without 2-DG, rapamycin, or H2O2. The cells were cultured for a total of 3 days before harvesting.
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3

Inhibiting Glycolysis and Glutaminase Modulates IL4-induced Cell Proliferation

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The glycolysis inhibitor, 2 Deoxy-D-glucose (2DG, Acros Organics), was dissolved in sterile water, and the glutaminase inhibitor, 968 (Calbiochem), was dissolved in DMSO. The compounds were then diluted in DMEM with 2% FBS for each experiment. Cell number in response to IL4 in the presence or absence of 2DG or 968 was quantified using a CyQUANT® proliferation assay (Life Technologies), per the manufacturer’s protocol. In all CyQUANT® assays, cells were seeded (4T1: 10,000 cells/well, MDA-MB-231: 8,000 cells/well, in 48-well plates) in 2% FBS DMEM, and allowed to attach before the media was removed and replaced with 2% FBS DMEM containing IL4 (BD Biosciences), the appropriate drug treatment, or vehicle control. Cells were allowed to grow for 48 hours in the presence of treatment prior to cell number analysis.
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4

Measuring Cellular ATP Content with Metabolic Inhibitors

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Cells were plated as 1 × 104 cells per well in a 96-well plate in cell type specific media. 18 h after plating, culture media was supplemented to include the metabolic inhibitors 2-deoxy-d-glucose (2-DG; Acros Organics) or oligomycin A (Cayman Chemical) to final concentrations as indicated in the figures (0.2% DMSO vehicle). 6 h following treatment, cells were lysed as per the manufacturer’s protocol for the Promega™ CellTiter-Glo™ 2.0 Assay. Total cellular ATP content was calculated using a standard curve of serially diluted ATP (Roche Applied Science) ranging from 0.5 nM to 5.0 μM. Significance was determined between groups via ANOVA, with post hoc Tukey HSD analysis for three experimental replicates, using the One-way ANOVA (ANalysis Of VAriance) with post-hoc Tukey HSD (Honestly Significant Difference) Test Calculator for comparing multiple treatments available at astatsa.com.
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5

Activation and Metabolic Regulation of Naive T Cells

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Naïve CD4+ T cells were isolated from fresh human blood samples with a negative selection isolation kit from Miltenyi Biotec as per protocol. The purity of naïve CD4+ T cells was evaluated with staining of anti-CD3 (Clone UCHT1, BioLegend, San Diego, USA), anti-CD4 (clone RPA-T4, BioLegend, San Diego, USA), and anti-CD45RA (HI100, BioLegend, San Diego, USA). Isolated cell purities were over 95% (Supplementary Figure S1). Cells were cultured in RPMI 1640 media (GE Health Care Life Sciences, Marlborough, USA) supplemented with 10% FBS (Life Technologies, Carlsbad, USA). Cells were stimulated overnight with anti-CD3 (10 μg/mL, pre-coated on plate, Clone UCHT1, BD Biosciences, San Jose, USA) and anti-CD28 (2.5 μg/mL, Clone CD28.2, BD Biosciences, San Jose, USA), with and without glycolysis inhibitor 2-deoxy-d-glucose (2-DG, 2 mg/mL, Acros Organics, New Jersey, USA), mTOR inhibitor rapamycin (100 Nm, Alfa Aesar, Ward Hill, USA) or H2O2 (50 μM, Sigma-Aldrich, St. Louis, USA). The next day the antibodies were removed and fresh media (RPMI and 10% FBS) were added with and without 2-DG, rapamycin, or H2O2. The cells were cultured for a total of 3 days before harvesting.
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