Log In Sign up
The largest database of trusted experimental protocols

Bioanalyzer system

Manufactured by Illumina
Visit Supplier

The Bioanalyzer system is a lab equipment product offered by Illumina. It is a microfluidics-based platform designed for the analysis and characterization of various biomolecules, including DNA, RNA, and proteins. The Bioanalyzer system provides automated, high-resolution electrophoretic separation and detection of these biomolecules within a miniaturized, integrated system.

Automatically generated - may contain errors

Lab products found in correlation

Hiseq 4000, by Illumina (2 mentions) Truseq chip library prep kit, by Illumina (1 mentions) Hiseq 4000 sequencer, by Illumina (1 mentions) Novaseq device, by Illumina (1 mentions) Truseq rna library prep kit v2, by Illumina (1 mentions) Rnaeasy minelute kit, by Qiagen (1 mentions) Novaseq 6000, by Illumina (1 mentions)

3 protocols using bioanalyzer system

1

DNA Sequencing Library Preparation

Check if the same lab product or an alternative is used in the 5 most similar protocols
Following DNA purifications, libraries were prepared using the TruSeq ChIP Library Prep Kit according to Illumina protocols, multiplexed library sizes were validated on an Agilent Bioanalyzer system and then sequenced (single-read) on an Illumina HiSeq 4000 sequencer.
Fulton S.L., Wenderski W., Lepack A.E., Eagle A.L., Fanutza T., Bastle R.M., Ramakrishnan A., Hays E.C., Neal A., Bendl J., Farrelly L.A., Al-Kachak A., Lyu Y., Cetin B., Chan J.C., Tran T.N., Neve R.L., Roper R.J., Brennand K.J., Roussos P., Schimenti J.C., Friedman A.K., Shen L., Blitzer R.D., Robison A.J., Crabtree G.R, & Maze I. (2022). Rescue of deficits by Brwd1 copy number restoration in the Ts65Dn mouse model of Down syndrome. Nature Communications, 13, 6384.
+ Open protocol
+ Expand
2

Transcriptome Analysis of Tumor Samples

Check if the same lab product or an alternative is used in the 5 most similar protocols
All RNAs used for quantitative gene expression analysis were extracted from fresh–frozen tissues. Quality of input RNA was assessed using the Agilent Bioanalyzer System and transcriptome analysis was performed using Illumina TruSeq strand-specific PolyA + libraries on an Illumina HiSeq4000 or NovaSeq device. Differential gene expression analysis was performed with the R2 Genomics Analysis and Visualization Platform (http://r2.amc.nl) using a reference cohort of embryonal tumors (n = 117), glial tumors (n = 126), and normal fetal and adult brain tissues (n = 36) that had been processed the same way. TPM values of the ET, PLAGL samples from our cohort are provided in the supplementary materials (Supplementary Table S8).
Keck M.K., Sill M., Wittmann A., Joshi P., Stichel D., Beck P., Okonechnikow K., Sievers P., Wefers A.K., Roncaroli F., Avula S., McCabe M.G., Hayden J.T., Wesseling P., Øra I., Nistér M., Kranendonk M.E., Tops B.B., Zapotocky M., Zamecnik J., Vasiljevic A., Fenouil T., Meyronet D., von Hoff K., Schüller U., Loiseau H., Figarella-Branger D., Kramm C.M., Sturm D., Scheie D., Rauramaa T., Pesola J., Gojo J., Haberler C., Brandner S., Jacques T., Sexton Oates A., Saffery R., Koscielniak E., Baker S.J., Yip S., Snuderl M., Ud Din N., Samuel D., Schramm K., Blattner-Johnson M., Selt F., Ecker J., Milde T., von Deimling A., Korshunov A., Perry A., Pfister S.M., Sahm F., Solomon D.A, & Jones D.T. (2022). Amplification of the PLAG-family genes—PLAGL1 and PLAGL2—is a key feature of the novel tumor type CNS embryonal tumor with PLAGL amplification. Acta Neuropathologica, 145(1), 49-69.
+ Open protocol
+ Expand
3

RNA Sequencing Library Preparation

Check if the same lab product or an alternative is used in the 5 most similar protocols
Following RNA purification with trizol and the Qiagen RNAeasy Minelute kit (Cat.# 74204), libraries were prepared using the TruSeq RNA Library Prep Kit v2 according to Illumina protocols, multiplexed library sizes were validated on an Agilent Bioanalyzer system and then sequenced (single-read) on an Illumina HiSeq 4000 or Illumina NovaSeq 6000 sequencer.
Fulton S.L., Wenderski W., Lepack A.E., Eagle A.L., Fanutza T., Bastle R.M., Ramakrishnan A., Hays E.C., Neal A., Bendl J., Farrelly L.A., Al-Kachak A., Lyu Y., Cetin B., Chan J.C., Tran T.N., Neve R.L., Roper R.J., Brennand K.J., Roussos P., Schimenti J.C., Friedman A.K., Shen L., Blitzer R.D., Robison A.J., Crabtree G.R, & Maze I. (2022). Rescue of deficits by Brwd1 copy number restoration in the Ts65Dn mouse model of Down syndrome. Nature Communications, 13, 6384.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!