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12 protocols using siinfekl

1

APC Assay with Dendritic Cells and T Cells

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The APC assay was performed as previously described (Roser-Page et al., 2014 (link)). Splenic CD11c+
dendritic cells (DCs) sorted by immunomagnetic beads (Miltenyi Biotech) were
used as antigen presenting cells. CD8+ T cells expressing a monoclonal
ovalbumin (OVA)-specific transgenic TCR were purified from the spleens of
OT-I mice by negative selection. CD11c+ DCs were pulsed for 4 hours with 1
μM antigen (OVA peptide) (SIINFEKL, InvivoGen). After two washes with
medium, cells were used for APC assay. For induced Treg cells cocultures,
OVA presenting dendritic cells at 150,000/well were incubated with splenic
OT-I CD8+ T cells (1 million/well) with or without induced Treg cells (1
million/well or increasing dose of Treg cells from 0.5 to 4 million/well)
for 24 h. CD8+ T cells were separated by EasySep Mouse CD8a positive
Selection Kit II (StemCell Technologies, Auburn, CA) and dissolved in TRIzol
reagent for RNA isolation and real time RT-PCR of Wnt10bmRNA. For ChIP assay, the time of coculture of OVA presenting dendritic
cells, CD8+ T cells and induced Treg cells was 4 h. During CTLA-4Ig
treatment, OVA presenting dendritic cells at 150,000/ well were incubated
with splenic OT-I CD8+ T cells (1 million/well) with or without CTLA-4Ig
(100 μg/mL) for 4h or 24 h.
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2

APC Assay with Dendritic Cells and T Cells

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The APC assay was performed as previously described (Roser-Page et al., 2014 (link)). Splenic CD11c+
dendritic cells (DCs) sorted by immunomagnetic beads (Miltenyi Biotech) were
used as antigen presenting cells. CD8+ T cells expressing a monoclonal
ovalbumin (OVA)-specific transgenic TCR were purified from the spleens of
OT-I mice by negative selection. CD11c+ DCs were pulsed for 4 hours with 1
μM antigen (OVA peptide) (SIINFEKL, InvivoGen). After two washes with
medium, cells were used for APC assay. For induced Treg cells cocultures,
OVA presenting dendritic cells at 150,000/well were incubated with splenic
OT-I CD8+ T cells (1 million/well) with or without induced Treg cells (1
million/well or increasing dose of Treg cells from 0.5 to 4 million/well)
for 24 h. CD8+ T cells were separated by EasySep Mouse CD8a positive
Selection Kit II (StemCell Technologies, Auburn, CA) and dissolved in TRIzol
reagent for RNA isolation and real time RT-PCR of Wnt10bmRNA. For ChIP assay, the time of coculture of OVA presenting dendritic
cells, CD8+ T cells and induced Treg cells was 4 h. During CTLA-4Ig
treatment, OVA presenting dendritic cells at 150,000/ well were incubated
with splenic OT-I CD8+ T cells (1 million/well) with or without CTLA-4Ig
(100 μg/mL) for 4h or 24 h.
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3

Quantifying IFN-γ Production in Activated T-cells

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We evaluated the immunological responsiveness of T-cells from different organs by quantifying the intracellular IFN-γ production in the CD8+ and CD4+ T-cells isolated from the immunized mice using a previously reported method.[24 (link)] Briefly, we prepared single cell suspensions from the lung, spleen and LN harvested 7 days after the boost immunization, using the procedure described above. Cells were cultured in Iscove modified Dulbecco medium media (Thermo Fisher Scientific) supplemented with 10% HI-FBS, 2 mM L-glutamine and 1% penicillin/ streptomycin at 37 °C. Cells from spleen and LN were plated on a 6-well plate at a 7 × 106 cells/well and cultured in presence of monensin (Sigma) and 1 μg mL−1 of SIINFEKL (InvivoGen) or 100 μg mL−1 OVA (InvivoGen) for 6 hours to re-stimulate OVA-specific CD8+ or CD4+ T-cells, respectively. In parallel, cells from the lung were plated in the same manner and re-stimulated with 1 μg mL−1 ionomycin and 50 ng mL−1 PMA (InvivoGen) for 4 hours. Cells from all three organs were additionally treated with 5 μg mL−1 brefeldin A (Thermo Fisher Scientific) for 2 and 3 hours to inhibit secretion of newly produced IFN-γ from CD8+ and CD4+ T-cells, respectively, prior to the cell collection. Cells were then stained for flow cytometric analysis.
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4

Murine IFNγ ELISPOT Protocol

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A mouse IFNγ ELISPOTPLUS (MABTECH) was performed according to manufacturer’s guidelines. In brief, single-cell suspensions of splenocytes, generated by mechanical dissociation followed by RBC lysis using ammonium chloride, were plated at 250,000 cells/well on an ELISPOT plate (MABTECH) and incubated for 24 hours at 37°C with the following peptides: TRP2180–188 peptide (1 μg/mL, SVYDFFVWL; ANASPEC), ConA positive control, or the irrelevant negative control OVA257–264 peptide (1 μg/mL, SIINFEKL, InvivoGen). Imaging was conducted using a CTL Immunospot S5 core (Immunospot) and quantified using ImmunoCapture and ImmunoSpot software (Immunospot).
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5

Immunological Analysis of Lymphocytes Post-Ear Immunization

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Mice were sacrificed at 7 or 28 days post-immunization in the ear, to collect SDLN and skin. SDLN were macerated and filtered, and skin-infiltrating lymphocytes were obtained as previously described (28 (link)). Briefly: Skin cell suspensions were obtained by enzymatic digestion with Liberase TL and DNAse, then chopped and incubated under the same conditions. Next, enzymatic digestion was stopped, and cell suspensions were filtered followed by the addition of DNAse. Finally, cells were washed with PBS, counted and stained. SDLN cells were re-stimulated as previously reported (28 (link)). Briefly: Cells were incubated for 48 h with 1 mg/ml of SIINFEKL (InvivoGen) and OVA peptide 323–339 (InvivoGen), followed by cell stimulation cocktail plus protein transport inhibitor for 4 h at 37°C. Then the lymphocytes were collected, washed, and stained.
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6

Measuring Interferon-Gamma Secretion in Activated Mouse Splenocytes

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OT-I mouse (6–8 weeks) splenocytes were isolated using Ficoll–Paque following mechanical homogenization and PBS washing of excised spleen tissues. Splenocytes were resuspended in RPMI 1640 (ATCC) containing 10% FBS and 100 U/mL of penicillin G and streptomycin. For stimulation, cells were incubated with 10 nM chicken egg ovalbumin peptide 257–264 (SIINFEKL, Invivogen) with or without 1000 IU/mL of IL-2 (or equimolar amounts modified protein) and plated at 2x106 cells/well within a 96-well plate. After 24 h, the cell culture supernatant was harvested and tested for IFNγ secretion via ELISA (R&D Systems). Optical density at 450 nm was measured using a Spectramax Id3 plate reader (Molecular Devices), and results were compared with standard curves. These studies were approved by Emory University’s Institutional Animal Care and Use Committee.
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7

OVA-Specific T Cell Activation Assay

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After 3 days of BMDM differentiation, BMDMs and 5 × 104 lymph node cells from OT-1 transgenic mice were co-cultured at various ratios with cognate OVA peptide (SIINFEKL; 1 µg/mL; Invivogen, San Diego, CA, USA). Cells were plated in the Mouse IFN-γ ELISPOTPLUS kit (ALP) (MABTECH, Nacka Strand, Sweden) and IFN-γ spots were detected after 48 h using ELISPOT reader systems (Autoimmun Diagnostika GmbH, Strassberg, Germany).
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8

Activation and analysis of T cells

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Both human and mouse cells were cultured in RPMI 1640 medium (Thermo Fisher Scientific, supplemented with 10% fetal calf serum and 1% penicillin/streptomycin.
Human CLL T cells were stimulated using anti-CD3 (clone1XE) and anti-CD28 (clone 15E8) soluble antibodies for 2 days either in the original PBMC pool or after T-cell enrichment using the EasySep human T cell enrichment kit (StemCell technologies).
Mouse splenocytes were stimulated for 4 h with OVA-peptide (100 pg/mL or 10 ng/mL, SIINFEKL, Invivogen) or PMA (10 ng/mL, Sigma Aldrich) and ionomycin (1 µg/mL, Sigma Aldrich) in presence of Brefeldin A (10 µg/mL, Invitrogen), GolgiStop (BD Biosciences) and anti-CD107a. Cytokine production and degranulation were assessed via flow cytometry as described below.
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9

OVA Peptide Immunization in Mice

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A mixture of OVA peptides was administrated in a s.c. injection in mice anesthetized by i.p. injection of xylazine (10 mg/kg) and ketamine (100 mg/kg). OVA257–264 (SIINFEKL) (InvivoGen, San Diego, CA, USA) is a class I (Kb)-restricted peptide epitope of OVA presented by the class I MHC molecule (CMH) H-2Kb. OVA323–339 (ISQAVHAAHAEINEAGR) (AnaSpec, San Jose, CA, USA) is an H-2b-restricted OVA class II epitope. 100 μg of each peptide emulsified with the same volume of IFA (Sigma-Aldrich) was administered. Controls were injected with PBS-IFA complexes. OVA peptides and PBS-IFA complexes were injected 2 h or 21 days post-first i.p. injection of MnTBAP (or PBS). Eight days post-OVA peptide injection, mice were sacrificed, and spleens were harvested to analyze OVA-specific T cell response.
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10

CD8+ T Cell Activation Assay

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BMDCs were pretreated with OVA (257–264) SIINFEKL (InvivoGen #vac-sin) for 4 h or pretreated with OVA protein (InvivoGen #vac-pova) overnight. OT-I CD8+ T cells were isolated from the spleen of OT-I mice using EasySep™ Mouse CD8+ T-Cell Isolation Kit (STEMCELL Technologies #19853). The CD8+ T cells were labeled using the CFSE cell division tracker kit (Biolegend #423801). The BMDCs and OT-I CD8+ T cells were co-cultured at a 1:4 ratio for 2 days in a flat-bottom 96-well plate (Corning #3596). In the experiments that are shown in Fig. 6, BMDCs were pulsed with OVA (257–264) SIINFEKL peptide (InvivoGen #vac-sin) and OVA peptide (323–339) (InvivoGen #vac-isq) overnight. OT-I CD8+ T cells and OT-II CD4+ T cells were isolated and stained with CFSE. The BMDCs and the mixture of OT-I CD8 positive T cells and OT-II CD4 positive T cells were co-cultured at a 1:4 ratio for 3 days in a flat-bottom 24-well plate (Corning #3596).
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