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Biospin spectrometer

Manufactured by Bruker
Sourced in Germany

The BioSpin spectrometer is a laboratory instrument designed for the analysis of biological samples. It utilizes nuclear magnetic resonance (NMR) technology to provide detailed information about the structure and dynamics of molecules within a sample. The core function of the BioSpin spectrometer is to generate and detect radiofrequency signals that interact with the magnetic properties of atomic nuclei, enabling the acquisition of high-resolution spectroscopic data.

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6 protocols using biospin spectrometer

1

Solid-state NMR Analysis of 13C/15N-Labeled Schizophyllum

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S. commune was grown on a PC membrane in medium containing 13C labelled glucose and 15N labelled (NH4)2SO4 and treated as described above. All ssNMR experiments were carried out on a 700 MHz Bruker Avance III or an 800 MHz Bruker Biospin spectrometer. Rigid molecules were probed using dipolar-based transfer schemes by combining cross-polarization (CP) with PARIS (Weingarth et al., 2010 ) or SPC5 (Hohwy et al., 1999 ) recoupling schemes. Two-dimensional dipolar-based (NCA-type (Baldus, 2002 )) correlation experiments involved SPECIFIC-CP (Baldus et al., 1998 ) to transfer polarization from 15N to 13C nuclei.
Mobile compounds were probed using J-based INEPT (Morris and Freeman, 1979 ) and TOBSY (Baldus and Meier, 1996 )- transfers as shown elsewhere (Andronesi et al., 2005 (link)). In addition, direct excitation spectra were recorded in order to excite all carbons present in the sample irrespective of molecular motion (see, e.g. Ref. (Labokha et al., 2013 (link))). For further details see Methods S4, for measuring conditions see Tables S1 & S2.
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2

Analytical Characterization of Organic Compounds

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Optical rotations were recorded using an Autopol V Plus polarimeter (Rudolph Research Analytical, Hackettstown, NJ, USA). Infrared spectra were acquired using an Alpha FT-IR Spectrometer (Bruker, MA, USA). The absorbance spectra were obtained on a UV-Vis Spectrophotometer UV-1700 PharmaSpec (Shimadzu, Columbia, MD, USA). NMR spectra were acquired on a Bruker BioSpin spectrometer (Rheinstetten, Germany) operating at 500 MHz for 1H and 125 MHz for 13C and equipped with a 5-mm probe in CDCl3. HRESIMS analyses for the compounds were measured using the Thermo Scientific-Q Exactive LC-HRESIMS spectrometer (Thermo Scientific, Waltham, MA, USA).
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3

CE-MRI Imaging of Human Atrial Anatomy

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After the functional mapping experiment, the human atria were formalin fixed and kept at 4°C. To prepare the heart for CE‐MRI, it was washed out with phosphate buffered saline and then incubated at 4°C in 0.2% Gd‐DTPA (dimeglumine gadopentetate Magnevist; Bayer Schering Pharma) for 7 days as previously described for human LRA.8 CE‐MRI was performed using a 9.4 T Bruker BioSpin Spectrometer (Ettlingen, Germany) and a 72‐mm volume coil at a resolution of 180×180×360 μm3. CE‐MRI images of the human atria (107×61×85 mm3) were interpolated to an isotropic resolution of 180 μm3, segmented, and smoothed using a custom Matlab program (MathWorks) and visualized in 3D using Amira (FEI Company) (Figure 1 and Figure S1).23, 24 Optical maps and the reconstructed 3D human atrial model were reconciled using atrial anatomical landmarks.8
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4

Synthesis of Methacrylated Dextran

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To synthesize methacrylated dextran with various degrees of functionalities, dextran (2.0 g, Mw: 40–500 kDa) was dissolved in 10 mL of anhydrous dimethyl sulfoxide (DMSO) with the addition to 0.2 g of base catalyst 4-dimethylamino pyridine (DMAP) and the required molar equivalent of glycidyl methacrylate (GMA, density = 1.042 g/mL at 25 °C). The mixture solution was kept constant at 45 °C and stirred for 24 h. After stirring, the reaction solution was pipetted dropwise into a 200 mL of ice-chilled isopropanol to precipitate modified dextran. The precipitation was then collected via centrifugation and subsequently re-dissolved and dialyzed against 4 L of milli-Q water at a temperature of 4 °C preceding lyophilization. Purified methacrylated-dextran (Dex-MA) was stored at − 20 °C until use. The functionality and degree of methacrylation of Dex-MA were analyzed using nuclear magnetic resonance spectroscopy (NMR, a 700 MHz Bruker BioSpin spectrometer, in D2O/DMSO), where the degree of methacrylation confirmed to achieve 40–88% modification depending on the initial molar equivalent of glycidyl methacrylate to glucopyranose. The peaks at 5.75 and 6.2 ppm represent the protons at the double bond of the GMA group.
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5

Solid-state NMR analysis of Bacillus subtilis

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B. subtilis colonies (3610 and Δmatrix) were grown on LB supplemented with 13C-labeled glucose for 72 h to provide a 13C-enrichment and were filled in 4 mm SSNMR rotors. Experiments were performed on a 600 MHz Bruker Biospin spectrometer equipped with a 4 mm Efree probe at a magic-angle spinning frequency of 11 kHz. Cross-polarization spectra were recorded using 1024 scans and a contact time of 1 ms. Water-edited 13C spectra (256 scans) were recorded using a T2-filter of 1.5 ms followed by a variable 1H mixing time. The 2D 1H-13C HETCOR experiments were recorded with and without a 5 ms 1H-1H mixing time using 128 scans and acquisition times of 7.5 ms (indirect) and 20 ms (direct).
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6

Mapping Atrial Fibrillation Drivers in Explanted Hearts

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Detailed approaches for recovering explanted human hearts and functional and structural imaging of the atria were described previously [6 (link),12 (link)]. Intact explanted human donor hearts (n = 7, 47 ± 14 y.o., two females) with AF history and/or cardiac co-morbidities were obtained from Lifeline of Ohio Organ Procurement Organization (table 1). The Institutional Review Board defined the study on samples from deceased donors as Not Human Subjects Research. The entire atria were isolated, coronary perfused, immobilized with blebbistatin and stained with the voltage-sensitive dye di-4ANDBQBS for near-infrared optical mapping (UltimaL CMOS camera, SciMedia, Japan) [4 (link),6 (link)]. Induction of AF by burst pacing (2–10 s) from the superior RA and/or posterior LA was attempted in all hearts. AF drivers were defined as localized sites with the most repetitive and recurrent re-entrant pattern that led to neighbouring regions and had a minimum temporal stability of 30%. After the functional mapping, CE-MRI was performed using a 9.4 T Bruker BioSpin spectrometer (Ettlingen, Germany) [4 (link),6 (link)].
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