The largest database of trusted experimental protocols

8 protocols using 0.5 m naoh

1

Captisol(R) Stock Solution Preparation

Check if the same lab product or an alternative is used in the 5 most similar protocols
Masses used to prepare stock solutions of Captisol® were corrected for moisture content (Karl Fischer titration, described below). All aqueous stock solutions were prepared using HPLC-grade water from Sigma-Aldrich (St. Louis, MO, USA). Equivalence points were determined by titration with 0.5 M NaOH (Sigma Aldrich, St. Louis, MO, USA). Linear and non-linear regressions were performed in OriginPro 2020 (OriginLab Corporation, Northampton, MA, USA).
+ Open protocol
+ Expand
2

Collagen-Based Biomimetic Lumen Devices

Check if the same lab product or an alternative is used in the 5 most similar protocols
200 µl of Rat Tail Collagen I, High Concentration (Corning, 354249, Bedford, MA, USA, stock at 8.28 mg/mL) was neutralized with 5 µl of 0.5 M NaOH (Sigma, S5881, St Louis, MO, USA) and diluted to 4.5 mg/mL. Relevant osmolarity was achieved using 40 µl PBS10× (Fisher Scientific, BP3991, Fair Lawn, NJ, 07410, USA) with 155 µL of sterile distilled water. The mixture was kept on ice for 20 min prior to loading the devices. pH was measured using pH Test Strips (Whatman, 2629-990, Little Chalfont, UK), and only mixtures with pH values of 7–7.4 were used for experiments. PS devices were thoroughly rinsed with deionized water twice and dried using vacuum aspiration. During collagen loading, the devices were placed on a metal block on top of ice to prevent the collagen solution from polymerizing until the devices were fully filled. Approximately 140 µL of collagen solution were injected in each line port to fill the connected line of lumen devices, whereas 10 µL were used per PDMS lumen device. Once all devices were filled, they were left to polymerize at room temperature for 10 min. After that, the devices were transferred to an omni-tray plate (Thermo, 242811, Rochester, NY, USA) and incubated at 37 °C for 30 min prior to cell loading.
+ Open protocol
+ Expand
3

Acidity and Peroxide Index Determination

Check if the same lab product or an alternative is used in the 5 most similar protocols
The standardized method proposed by Rani et al. [20 (link)] was employed to determine the acidity. Following the pH measurement, the sample was neutralized with 0.5 M NaOH (Sigma-Aldrich, St. Louis, MO, USA) until it reached a pH of 8.20. Results were expressed as g oleic acid/100 g dry matter.
The peroxide index was determined in accordance with the official AOAC method [21 ] for the peroxides values of oils and fats. Then, 0.5 g of the sample was weighed and solubilized in an aqueous solution containing 18 mL of acetic acid and 12 mL of graphyl chloroform (Sigma-Aldrich, St. Louis, MO, USA). After that, 0.5 mL of a saturated solution of KI (Sigma-Aldrich, St. Louis, MO, USA) and 30 mL of distilled water were added and titrated with a 0.01 M Na2S2O3 solution (Sigma-Aldrich). Results were expressed as meq O2/kg dry matter.
+ Open protocol
+ Expand
4

Chromosome Analysis of Sperm Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cells were collected and then suspended in PBS (Sigma-Aldrich, USA). Carnoy’s Solution (3:1 methanol:acetic acid; Sigma-Aldrich, USA) was added in a 10:1 ratio with the sample suspension, then centrifuged for 5 min at 1500 rpm (300 g). The cell pellet was resuspended in Carnoy’s Solution, incubated for 15 min at –20 °C, and then centrifugation was repeated. Cold 10-μl drops were placed on pre-coated fluoro slides (Thermo Scientific, USA) and warmed to 52 °C. Slides were dehydrated, then decondensed in 0.5 M NaOH (Sigma-Aldrich, USA) solution for 1 min and then dehydration was repeated. Slides were then treated with 4 μl AneuVysion Multicolor DNA Probe (Vysis CEP 18/X/Y; Abbott Molecular, USA), and then incubated in a 37 °C humidified chamber for a minimum of 16 h. Following incubation, slides were rinsed in 0.3% NP 40 in 0.4× SSC warmed to 73 °C for 2 min followed by 0.1% NP 40 in 2× SSC for 10 s. Once dry, slides were counterstained with DAPI (Abbott Molecular, USA) and coverslipped. Slides were analyzed for diploidy by examining chromosomes X, Y, and 18 using DAPI, FITC, TxRed, and Aqua channels on an Olympus BX 61 fluorescence microscope and imaged using HCImage software (Hamamatsu Photonics, Japan). Human sperm was used as a positive control for analysis. Slides were stored between analyses and for the long-term at –20 °C.
+ Open protocol
+ Expand
5

Quantitative TRAP Activity Assay

Check if the same lab product or an alternative is used in the 5 most similar protocols
Culture supernatants were collected after 7 days of differentiation and TRAP activity was measured with a colorimetric assay. Briefly, pnitrophenyl phosphate (NewEngland Biolabs) was diluted in buffer containing 420 mM acetic acid (Sigma-Aldrich) and 160 mM tartrate solution (Merck) and added 1:1 to culture supernatant. After 1 h, the reaction was stopped with 0.5 M NaOH (Sigma-Aldrich) and the absorbance at 405 nm was determined using a spectrophotometric plate reader (Bio-Rad Laboratories).
+ Open protocol
+ Expand
6

Enzymatic Activity Modulation by Substrates

Check if the same lab product or an alternative is used in the 5 most similar protocols
The effects of various substrates were measured on enzymatic activity. The multiple substrates included gelatin, casein, and keratin, which were used to determine the alteration of the isolated protease enzyme activity. The different substrates were added to 100 µL PBS. The purified enzyme (0.25 mg/100 µL PBS) was added to the substrate PBS solution and incubated at 37°C for 10 minutes. Then, 0.2 mL of 5 M TCA (Merck, Germany) was added to stop the reaction. The solution was centrifuged at 3000 g for 5 minutes, and 1 mL of 0.5 M NaOH (Merck, Germany) and 0.3 mL of diluted Folin reagent (Merck, Germany) (1 mL of Folin reagent diluted in 2 mL of distilled water) were added. The reaction optical density (OD) was read at 750 nm. The kinetic parameters were calculated using various casein concentrations as a substrate from the Michaelis-Menten equation.
+ Open protocol
+ Expand
7

DEAE-Cellulose Column Purification Protocol

Check if the same lab product or an alternative is used in the 5 most similar protocols

DEAE-cellulose (10 g; Sigma Aldrich, Germany) dry gel washed with distilled water and left at 4°C for 16 h to remove small particles. The swollen gel was suspended in 0.5 M HCl (Merck Millipore, Germany) for 30 min and was filtered and washed with distilled water.The gel was suspended in 0.5 M NaOH (Merck Millipore, Germany) for 30 min (20 ) and washed with phosphate buffer (pH 6.3) 5×. The gel was packed into a XK 26/20 column (GE Healthcare, Sweden) with a 300 cm.h-1 linear velocity (26.5 mL.min-1) using preparative HPLC system (Waters, USA). The packed column was 85 mm bed height and 45 mL bed volume. The column was equilibrated by 3 column volume (CV), 0.07 M buffer phosphate pH 6.3 (19 ,21 (link)) at 225 cm.h-1 linear velocity (20 mL.min-1). Sample was loaded into the column at 150 cm.h-1. Linear flow rate of 13.3 mL.min-1 was applied to separate the adsorbed impurities.
+ Open protocol
+ Expand
8

Extracting Collagen from Bovine Skin

Check if the same lab product or an alternative is used in the 5 most similar protocols
Bovine skin was soaked in 0.5 M NaOH (Merck KGaA, Darmstadt, Germany), with ratio of skin/solution at 1:5 (w/v), for 3 days to remove non-collagenous proteins. The solution was changed every day. The alkaline treated skins were washed with tap water until neutral pH. The samples were then soaked in 0.1 M citric acid (Merck KGaA, Darmstadt, Germany) at a ratio of 1:5 (w/v) for 1 h. The swollen skin was mixed with distilled water at 1:5 (w/v) at (60 °C) for 6 h. The mixtures were then filtered using filter paper to remove insoluble materials. The supernatant was freeze-dried and subjected to analyses.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!