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16 protocols using cd40l

1

Activation and Labeling of PBMCs

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PBMCs were rested in 37°C 5% CO2 incubator for 30 min (biosynthesis activity assays), 1 h (metabolism assays), or 2 h (stimulation assays) at 5 × 106 cells/mL in CCM. Metabolism samples were fixed in 1.6% PFA in PBS for 10 min and then palladium barcoded as previously described (Zunder et al., 2015 (link)). After rest, biosynthesis activity assay samples were spiked with 2 mM BRU and 10 μg/mL puromycin and incubated for an additional 30 min (Kimmey et al. 2019 (link)) and then fixed and palladium barcoded. Stimulation samples were resuspended in CCM with 3.3 mM H2O2 (Irish et al., 2010 (link)) and specified doses of anti-kappa F(ab’)2 (Southern Biotech) and CD40L (BioLegend) for 10 min and then fixed and palladium barcoded.
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2

Porcine Immune Cell Characterization

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The following antibodies were used: unlabeled goat anti-pig IgM and IgG polyclonal antibodies (Ab) (Bethyl), mouse anti-porcine IgM monoclonal antibody (mAb) (AbD Serotec K52 1C3), hamster anti-mouse CD80 PE-Cy7 mAb, mouse anti-pig SLA Class II DR mAb (AbD Serotec 2E9/13), horseradish peroxidase (HRP)-conjugated goat anti-pig IgM and IgG polyclonal Ab (Bethyl); phycoerythrin (PE)-labeled mouse anti-porcine CD21 mAb (Acris Antibodies BB6-11C9.6); FITC-goat anti-pig IgG polyclonal Ab (Bethyl); and eFluor 780-Fixable Viability Dye (eBioscience). Unlabeled antibodies were conjugated with the following APEX antibody labeling kits: Alexa Fluor 488, Alexa Fluor 568, Alexa Fluor 647, and Pacific Blue. Reagents used for tissue culture included recombinant human (rh) BAFF and APRIL (Peprotech); IL-4 (Gibco); CD40L (BioLegend), and IL-21 (eBioscience). Cells were cultured in complete RPMI 1640 with L-glutamine, 10% fetal bovine serum (FBS), 10 mM HEPES pH 7.2, 1% non-essential amino acids, 1% sodium pyruvate, and 20 μg/ml gentamycin.
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3

Functional Characterization of PBMCs

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PBMCs were isolated from the patient and healthy controls using Ficoll-Paque (Capricorn Scientific). Cells were resuspended in RPMI-1640 containing 15% FCS, 10 mM HEPES (Sigma), 100 U/ml penicillin (Sigma), and 200 mM L-glutamine (Sigma). For proliferation assays, cells were stimulated with CD3/CD28 Dynabeads (1:1 ratio, ThermoFisher) or 50 ng/ml PMA (Sigma) and 1 µg/ml ionomycin (Sigma) for 3 days or 200 ng/ml CD40L + 100 ng/ml IL-4 (BioLegend) for 6 days. 0.5 μg/ml or 5 μg /ml ferric ammonium citrate (Sigma) was added into the wells. Proliferation was measured by labeling the cells with 5 μM CFSE (BioLegend) according to the manufacturer’s instructions. For activation assays, cells were stimulated with CD3/CD28 Dynabeads for 24 and 48 h for CD69, CD25, and ICOS expression on 7-AAD − live T cells. For apoptosis assay, PBMCs were stimulated with anti-CD3 (1 μg/ml) and anti-CD28 (2 μg/ml) for 72 h. Apoptotic cells were determined by flow cytometry using FITC Annexin V Apoptosis Detection Kit with 7-AAD (BioLegend).
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4

Platelet Functional Assays in Patients

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Whole blood from patients and healthy donors was collected into tubes containing 3.8% sodium citrate (9:1) and was centrifuged at 150g for 15 minutes to obtain platelet‐rich plasma (PRP).7 Washed platelets were obtained from PRP. To avoid leukocyte contamination, only the top 75% of the PRP was collected. The purity of platelets was checked by platelet‐specific markers (CD45‐ve and CD61+) by flow cytometry, as described previously.24 To perform the ex vivo tests, platelets from HC were diluted with Tyrode’s buffer to obtain the same number of platelets as that of the patient. Platelet aggregation, intracellular calcium flux (362561; BioLegend, San Diego, CA), anti‐procaspase‐activating compound‐1 (PAC‐1) (362803; BioLegend), P‐selectin (304903; BioLegend), and CD40L (310809; BioLegend) expression analyses were performed.7 Intracellular ROS were measured (109244‐58‐8; Cayman Chemical Co., Ann Arbor, MI)25 (Supporting Methods).
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5

Co-culture of Ovarian Cancer Cells with CAR THP-1 and T Cells

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The human ovarian cancer cell lines SKOV3 and A2780 (5 × 105) were co-cultured with CAR THP-1 cells or vehicle control (5 × 105) and incubated for 4 h (at 37 °C and 5% CO2). Whole blood from healthy blood donors was diluted 1:1 in PBS and layered in human lymphocyte isolation medium. Peripheral blood mononuclear cells (PBMC) were separated by density gradient centrifugation in a 50 ml tube. CD3+ T cells in PBMC were separated using CD3 magnetic beads (130-097-043, Miltenyi Biotec). Purified CD3 + T cells (5 × 105) were immediately added to the co-culture system of tumor cells and CAR THP-1 or vehicle control and cultured for 48 h at 37 °C and 5% carbon dioxide incubator. T cells were harvested, resuspended in PBS, and labeled with anti-human CD8 (344,747, BioLengend), anti-human IFN-γ (2,331,102, Invitrogen), Fasl (306,421, BioLegend) and CD40L (310,824, BioLegend) antibodies at 4 ℃ for 30 min. After centrifugation at 370 g for 5 min, 200 µl PBS was used to resuspended cells and detected by flow cytometry. CAR-M cells were harvested, resuspended in PBS, and labeled with anti-humanCD40 (40,334,308, BioLegend) antibodies at 4 ℃ for 30 min. After centrifugation at 370 g for 5 min, 200 µl PBS was used to resuspended cells and detected by flow cytometry.
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6

Immunomodulatory Effects of CK Compound

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Complete Freund's adjuvant (CFA, 10 mg/ml) was obtained from Chondrex Inc. (Redmond, WA). RPMI-1640 medium was obtained from Gibco Co., Ltd. (Waltham, MA). The fluorophore-conjugated mAbs to CD45R, IgM, CD27, CD40, and CD40L were from Biolegend Co., Ltd (San Diego, CA). CK (20-Ob-D-glucopyranosyl-20(S)-protopanaxadiol, C 36 H 61 O 8 , MW: 621.88) (Figure 1) was provided by Zhejiang Haizheng Medicine Co., Ltd. (Zhejiang, China). CK was separated and purified from protopanaxadiol-type saponins by microbial fermentation and macroporous resin chromatography, and the purity (498%) was determined by high-performance liquid chromatography. Methotrexate (MTX) was obtained from Shanghai Xinyi Pharmaceutical Co., Ltd. (Kyoto, China).
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7

Modulation of B cell responses by TEX and ATP

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CD19+ B cells were seeded at 200,000 cells/mL in RPMI 1640 medium (1% penicillin/streptomycin and 10% FBS depleted of extracellular vesicles) and co-cultured for 96 h as follows: only culture medium; TEX (5, 10, or 20 µg/mL); ATP (20 µM or 2000 µM; #R0441, Thermo Fisher Scientific, Waltham, MA, USA); TEX and 20 µM ATP, or TEX and 2000 µM ATP. During these 96 h, B cells were either kept in a resting state (resting B cells, Brest) or activated (activated B cells, Bact) with human IL-4 (200 IU/mL, #574004, BioLegend, San Diego, CA, USA) and CD40L (2 µg/mL, #591706, BioLegend, San Diego, CA, USA).
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8

Assessing B Cell Class Switch Recombination

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Peripheral blood mononuclear cells (PBMCs) were purified with Ficoll density gradient centrifugation. For flow cytometry or cell sorting, PBMCs were stained in 1X PBS 0.5% BSA with appropriate antibodies at 4 °C for 30 min. Flow cytometry data were acquired on a FACSCanto II (BD Biosciences) and analyzed with FlowJo version 10 (Tree Star). For assessing in vitro immunoglobulin CSR, CD19+CD27IgM+ naïve B cells were sorted on a FACSAria III (BD Biosciences) and stimulated with CD40L (5 µg/mL; Biolegend) and IL-21 (100 ng/mL; Preprotech). After 5 days, expression of IgG and IgA was assessed on CD19+CD27+ B cells using flow cytometry.
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9

Investigating Ovarian Cancer Immunotherapy

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Conventional C57BL/6 mice were obtained from Envigo and housed at the pathogen-free animal facility of the Ludwig Institute in Epalinges (license 2797.1g), under approved protocols. Mice (n=15 per group) were injected i.p. with 0.5 million Tp53−/−Brca1−/− ID8 ovarian cancer cells (a kind gift of Dr. Ian McNeish, Imperial College London (Walton et al., 2017 (link)) expressing luciferase (Bruand et al., 2021 ) and evaluated weekly for the luciferase signal by IVIS Lumina (Perkin Elmer). Mice were treated with 100 μg/mouse of αPD-1 (RMP1–14, BioX Cell), αCTLA-4 (9D9, BioX Cell), CD40L (FGK45), or αCD28 antibody (E18, BioLegend), 3 times/week for 3 weeks, except for CD40L (twice/week, 2 weeks), starting 5 days after tumor injection. At the end point, mice were euthanized, and blood and tumors were collected. Tumors were minced, dissociated and stained for CD45.2 BUV737 (104), CD83 BV711 (Michel.19), I-a/I-E FITC (2G9), Gr1 FITC (RB6–8C5) from BD, PD-1 BV510 (29F.1A12), PD-L1 BV785 (10F.9G2), CD80 BV421 (16–10A1), CD86 APC-A780 (GL-1), CD4 BV711 (RM4–5), F4/80 BV650 (BM8), CD11b BV605 (M1/70), Ki-67 PEDazzle (16A8), CD103 PE (2E7), CD137 APC (17B5) from BioLegend, and PD-L2 PerCP Cy5.5 (122), CD8a APCeFluo780 (53.6.7), and CD11c APC (N4/18) from ThermoFisher Scientific.
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10

Flow Cytometric Analysis of Transfected 293 Cells

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Transfected 293 cells were cultured for 24–48 h and stained with antibodies (CD40L, MHC-I, Fas, CD54; BioLegend, San Diego, CA, USA; antibody clones are shown in Supplementary Information), washed (0.5% bovine serum albumin in PBS) and fixed (1% paraformaldehyde/PBS). Cells were analyzed by flow cytometry using BD FACSCanto 2 (BD Biosciences, San Jose, CA, USA) and data were evaluated in Flow Jo (Tree Star, Ashland, OR, USA).
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