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3 protocols using isopropyl β d thiogalactoside

1

Optimization of GST-ALR Fusion Protein Expression

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To optimize the expression conditions for GST-ALR (the fusion protein), Escherichia. coli cells carrying the human GST-ALR expression plasmid (pGEX-4 T-1, with N-terminal GST) were grown in fresh Luria-Bertani liquid medium containing 0.1 mg/mL ampicillin and 0.05 mg/mL chloramphenicol overnight at 37°C in a shaking incubator. The production of protein was induced with 1.0 mM isopropyl-β-D-thiogalactoside (Beyotime, Shanghai, China) for another 4 h, until the optical density at 600 nm was between 0.6 and 0.8. Bacteria were centrifuged and resuspended in 1× PBS. Bacterial cell walls were broken by ultrasonication. Supernatants and precipitates were collected and processed for 15% sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE) (Supplementary Fig. 2A). Purified GST-ALR was obtained using a GST-tag Protein Purification Column (Beyotime), followed by washing with 20 mM reduced L-glutathione (Sigma-Aldrich, St. Louis, MO, USA) and purified with ÄKTA (GE Healthcare) overnight at 4°C to obtain the purified GST-ALR (Supplementary Fig. 2B). After dialysis against PBS for 2 days, GST-ALR was diluted to 1 mg/mL with PBS and processed for 15% SDS-PAGE (Supplementary Fig. 2C). The peptide sequence was NH2-MRTQQKRDTKFREDCPPDREELGRHSWAVLHTLAAYYPDLPTPE QQQDAQFIHLFSKFYPCEECAEDLRKRLCRNHPDTRTRACFTQWLCHLHNEVNRKLGKPDFDCSKVDERWRDGWKDGSCD-COOH.
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2

Characterization of SARS-CoV-2 Nucleocapsid Protein

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The ssDNA oligonucleotides and SARS-CoV-2 nucleocapsid protein coding sequences used in this study were synthesized by Beijing Aoke Dingsheng Biotechnology Co., Ltd. The specific sequences of the ssDNA oligonucleotides are provided in Table S1. The following reagents and kits were purchased from the respective suppliers: isopropyl β-D-thiogalactoside (IPTG), kanamycin, Lipo293 Transfection Reagent, Bradford Protein Concentration Determination Kit, the His-tag Purification Resin, Alexa Fluor 555-labeled Donkey Anti-Rabbit (H + L) antibody, Anti-Flag Magnetic Beads, and Anti-His Magnetic Beads were obtained from Beyotime Co., Ltd. Taq DNA polymerase, T4 DNA ligase, and CCK-8 Cell Counting Kit were purchased from Vazyme Biotechnology Co., Ltd. Anti-Flag Monoclonal Antibody, Anti-His Monoclonal Antibody, and anti-GAPDH Monoclonal Antibody were purchased from Proteintech Group, Inc. Dulbecco’s modified Eagle’s medium (DMEM; high glucose) and penicillin-streptomycin (liquid) were obtained from Thermo Fisher Scientific, Inc.
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3

Purification of Recombinant Proteins

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Monosodium glutamate (MSG), PLP, boric acid, phenol and sodium hypochlorite (Solarbio Science & Technology Co., Ltd., Beijing, China). Lowry kit and Isopropyl β-D-Thiogalactoside (IPTG) were purchased from Beyotime (Shanghai, China). PageRuler Prestained Protein Ladder (Thermo Fisher Scientific Inc., Waltham, MA, USA). Chelating Sepharose (Ni-IDA) resin matrix was from GE Life Sciences (Pittsburgh, PA, USA). All the other reagents used were analytical or chromatographic grade unless otherwise noted.
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