The largest database of trusted experimental protocols

Lysis buffer

Manufactured by Bio-Rad
Sourced in United States, Australia

Lysis buffer is a lab reagent used to disrupt cellular membranes and release the contents of cells, including proteins, nucleic acids, and other cellular components. It is a core tool for sample preparation in various biological and biochemical applications.

Automatically generated - may contain errors

41 protocols using lysis buffer

1

Western Blot Protein Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
Total protein was obtained from cell pellets previously washed with PBS, through digestion via the lysis buffer (Bio-Rad, Hercules, CA, USA). Samples were loaded on polyacrylamide gels for electrophoresis and transferred to a nitrocellulose membrane (Bio-Rad, Hercules, CA, USA). Blocking was performed for 1 h with 5% milk solution, and membranes were incubated with the primary antibody overnight. After washing, the membranes were incubated with the Secondary IgG-HRP secondary antibody (Cell Signaling, MA, USA), ultimately being rinsed and envisioned by using the enhanced chemiluminescence (ECL) reagent (Bio-Rad, Hercules, CA, USA).
+ Open protocol
+ Expand
2

Western Blot Analysis of Protein Expression

Check if the same lab product or an alternative is used in the 5 most similar protocols
Protein lysates from HaCaT cells and skin tissues were collected in ice-cold lysis buffer (Bio-Rad). Protein concentrations in cell lysates were determined using a DC kit (Bio-Rad). These samples were separated by SDS-PAGE electrophoresis and transferred onto a PVDF membrane. Following protein transfer, nonspecific sites were blocked with 5% nonfat dry milk in Tris buffered saline plus Tween-20 for 1 h at room temperature. Membranes were then incubated with primary antibodies overnight at 4°C. The next day, blots were washed three times for 10 min each on an orbital shaker, then membranes were incubated with HRP-conjugated secondary antibodies for 1.5 -2.0 h. Protein bands were visualized with an iBright1000 imaging system with the help of enhanced chemiluminescence according to the manufacturer’s instructions (Santa Cruz Biotechnology, Dallas, TX, USA).
+ Open protocol
+ Expand
3

Ovarian Protein Extraction and Western Blotting

Check if the same lab product or an alternative is used in the 5 most similar protocols
Total proteins were isolated from frozen ovary samples using lysis buffer (Bio-Rad) according to the manufacturer’s instructions. Briefly, the tissues were washed twice with cold PBS and lysed with RIPA lysis buffer for 25 min. The lysates were sonicated three times at 20-second intervals, aliquotted, and stored at −20 °C. The protein concentrations were determined using a DC protein assay kit (Bio-Rad), and equal amounts of protein were subjected to 15% SDS-PAGE and transferred to nitrocellulose membranes. The membranes were incubated overnight at 4 °C with primary antibodies against Hsp 90 (1:1000; Assay Designs, Stressgen, San Diego, CA, USA) or β-actin (1:2000; R&D Systems, Minnealpolis, MN, USA). The membranes were washed with PBS-Tween (0.05%), and then incubated with goat anti-mouse or anti-rabbit IgG HRP-conjugated secondary antibodies for 90 min at room temperature. Antibody-bound proteins were visualized using an ECL western blotting analysis system (Amersham Pharmacia Biotech UK Limited, Buckinghamshire, UK) and assessed with a Chemi-Doc system (Bio-Rad). The membranes were first probed with the Hsp 90 antibody, and then subsequently stripped and reprobed with β-actin antibody as an internal control and to confirm equal loading.
+ Open protocol
+ Expand
4

TRAIL Cytotoxicity Evaluation on LCSCs

Check if the same lab product or an alternative is used in the 5 most similar protocols
Before transfecting the selected LCSCs and non-LCSCs, the selected cell lines were seeded in 96-well plates at 5×103 cells/well.44 (link) After 24 hours of transfection, the cells were incubated along with various concentrations of TRAIL for next 48 hours. After incubation, the cells along with medium were exposed to MTT (Thermo Fisher Scientific) (20 µL) at a concentration of 5 mg/L for next 4 hours. The cells after 4 hours were subjected to lysis using a lysis buffer (Bio-Rad Laboratories Inc.) for 15 minutes at room temperature. The absorbance at 570 nm was recorded using a microplate reader (Thermo Fisher Scientific) for each cell.
+ Open protocol
+ Expand
5

Protein Expression Analysis of Chondrocytes

Check if the same lab product or an alternative is used in the 5 most similar protocols
The cells were washed three times with PBS and suspended in ice-cold lysis buffer (Bio-Rad, Hercules, CA, USA). The lysates were separated by 12% SDS-PAGE, and the proteins of equal quantity were transferred to nitrocellulose membranes. Membranes were blocked with Tris-buffered saline with Tween-20 buffer (Thermo Fisher Scientific, Waltham, MA, USA) containing 5% nonfat milk (Yili, China) and incubated overnight at 4°C with collagen II, collagen X (Abcam, Cambridge, MA, USA), aggrecan, Bcl-2, Bax, caspase-3 (Santa Cruz, Dallas, TX, USA), p21, p27, CDK2, CDK4 (Cell Signaling Technology, Danvers, MA, USA), p-ERK1/2, and ERK1/2 (Abcam, Cambridge, MA, USA) primary antibodies. The following day, the membranes were washed and incubated with the corresponding secondary antibodies at room temperature (22-28°C) for 1 h. An enhanced chemiluminescence detection system (Thermo Scientific, MA, USA) was finally used to determine the emission of the membrane. The experiments were performed in three independent replicates. The GAPDH expression level was used as an internal control. The Western blot results were quantified with an image analyzer (Quantity One-4,2,0, Bio-Rad, Hercules, CA) and were normalized to GAPDH immunostaining. The relative protein expression was compared with the control group.
+ Open protocol
+ Expand
6

MICA/B Expression and NK Cell Cytotoxicity

Check if the same lab product or an alternative is used in the 5 most similar protocols
SMMC7721 and HepG2 cells were stained with anti-MICA/B (clone 6D4, Biolegend, CA, USA) for 30 min and fluorescein isothiocyanate (FITC)-labeled goat anti-mouse IgG1κ mAb (BD Biosciences, NJ, USA) for 20 min on ice. Mouse IgG1κ isotype control (BD Biosciences, NJ, USA) was used as a negative control. A minimum of 20,000 gated events/sample was collected on a flow cytometer (FACSCalibur, Elite ESP, FL, USA) and analyzed using CellQuest software. SMMC7721 and HepG2 cells from different treatment groups were lysed in lysis buffer (Bio-Rad, CA, USA), and the western blot analysis was performed as described previously [10 (link)]. The cytotoxicity analysis was performed with the CytoTox 96 Non-Radioactive LDH Cytotoxicity Assay (Promega, WI, USA), according to the protocol provided. To analyze the involvement of MICA/B in cytolytic activity of NK cells, anti-MICA/B mAb (6D4) or isotype-matched control Ab was added during the cytolytic assay.
+ Open protocol
+ Expand
7

Western Blot Protein Analysis Protocol

Check if the same lab product or an alternative is used in the 5 most similar protocols
The various groups of cells were rinsed with PBS buffer, then cytoplasmic extracts were prepared with lysis buffer (Bio-Rad, USA) mixed with protease inhibitors (Roche, USA). We determined the protein concentration with Bio-Rad DC Protein Assay Kits (USA) according to the instructions. After boiling at 95°C for 5 min, 40 μg of protein samples mixed with 2× SDS buffer were separated by 10% polyacrylamide gel, and received electrophoresis for 100 min and transferring for 90 min. Then, nitrocellulose membranes were blocked for 1.5 h in TBST solution with 5% non-fat milk power at room temperature. After blocking, the membrane was exposed to the first antibodies (1: 1000 dilution with TBST buffer) overnight at 4°C. The next day, membranes were rinsed with TBST buffer 3 times (5 min each) and then incubated with different secondary antibodies (1: 5000 dilution with TBST buffer) for 1 h. Membranes were rinsed again with TBST buffer 3 times (5 min each), and the bands were visualized with a chemiluminescence detection system (Amersham). The target bands were quantified as the relative ratio between the bands of interest and GAPDH bands.
+ Open protocol
+ Expand
8

Cytokine Quantification in Liver Tissue and Plasma

Check if the same lab product or an alternative is used in the 5 most similar protocols
Liver tissue was homogenized in lysis buffer (Bio-Rad) supplemented with protease inhibitors (Complete protease inhibitor cocktail, Roche) using a ratio of 1 mg tissue per 4 μl buffer. Samples were centrifuged at 500 g for 15 min and protein concentration determined in the supernatants. They were diluted with Bioplex sample diluent to a final concentration of 300 μg/ml. Plasma was obtained from whole blood taken from the left ventricle by cardiac puncture. Aliquots of 400–500 μl of blood were aspirated into a 2 ml syringe containing anticoagulant and immediately placed in EDTA containing tubes. Blood cells were separated by centrifugation at 1500 g for 15 min and the resulting plasma diluted 1:4 in Bioplex sample diluent. Cytokine content was analyzed using the Bio-Plex Multiplex immunoassay kit following the manufacturer's instructions.
+ Open protocol
+ Expand
9

Western Blot Analysis of Phosphorylated ERK1/2

Check if the same lab product or an alternative is used in the 5 most similar protocols
For western blot analysis, the cells were plated in six-well plates and cultured as described above. After reaching confluency, the cells were treated with each agent. The cells were rinsed with ice-cold PBS and scraped on ice into lysis buffer (Bio-Rad, Hercules, CA, USA) containing 65.8 mM Tris-HCl (pH 6.8), 26.3% (w/v) glycerol, 2.1% sodium dodecyl sulphate (SDS), and 0.01% bromophenol blue, to which 2-mercaptoethanol was added to achieve a final concentration of 5%. The cell lysates were sonicated for 20 s. The cell lysates were electrophoresed on 10% SDS-polyacrylamide gels and transferred onto a nitrocellulose membrane (Bio-Rad). The blots were blocked with Tris-buffered saline (TBS) containing 1% Tween 20 (Bio-Rad) and 3% bovine serum albumin (BSA) for 1 h at 4 °C. Then, the blots were incubated overnight at 4 °C with gentle shaking with a primary antibody against phosphorylated ERK1/2 (1:2000 dilution) and other primary antibodies (1:1000 dilution). These blots were extensively washed with TBS containing 1% Tween 20 and were further incubated with a 1:5000 dilution of horseradish peroxidase-coupled IgG of specified animal species (rabbit or mouse) matched to the primary antibodies in TBS for 30 min at 4 °C. The blots were then washed, and the signal was visualised using an enhanced chemiluminescence technique.
+ Open protocol
+ Expand
10

Western Blot Analysis of Spinal Cord

Check if the same lab product or an alternative is used in the 5 most similar protocols
The L4-L6 spinal cord segments were rapidly extracted from the anesthetized rats. The tissues were homogenized in lysis buffer (Bio-Rad Laboratories, Hercules, CA, USA) which contains a mixture of protease inhibitors and phenylmethylsulfonyl fluoride (Roche Diagnostics, Basel, Switzerland). Equivalent amounts of protein (10 μl) were loaded and separated by 10% sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE; Bio-Rad Laboratories), and transferred onto PVDF membranes (Millipore). The membranes were incubated with the primary antibodies overnight at 4°C, followed by HRP-conjugated secondary antibodies for 2 h (1:1,000; #7074 and #7076; Cell Signaling Technology). The secondary antibody signal was detected by enhanced chemiluminescence (Millipore), and captured using the ChemiDoc XRS system (Bio-Rad Laboratories). The following primary antibodies were used: rabbit anti-p-JNK (1:1,000; ab4821), rabbit anti-JNK (1:1,000; ab85139), rabbit anti-PDE4B (1:1,500; ab14611) (all from Abcam), mouse anti-GFAP (1:2,000; #3670; Cell Signaling Technology), goat anti-IBA1 (1:1,000; MABN92; Millipore) and mouse anti-β-actin (1:10,000; A1978; Sigma-Aldrich).
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!