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21 protocols using cell line nucleofector kit

1

Generation of ORAI1 Knockout HEK293 Cell Line

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ORAI1 sequence-specific guide RNAs were inserted into the lentiCRISPR v2 vector (Addgene, Plasmid #52961) with the BsmBI restriction site to create a gRNA-Cas9-encoding plasmid. The complete list of primers used is included in Supplementary Table 2. HEK293 cells (ATCC, CRL-1537) were transfected with the gRNA-Cas9 plasmid using the Amaxa Nucleofector (Lonza, Nucleofector™ 2b Device) and the cell line Nucleofector Kit (Lonza, VCA-1003) according to the manufacturer’s protocol (Q-001). Forty-eight hours after transfection, cells were cultured in DMEM supplemented with 10% fetal bovine serum, penicillin, and streptomycin containing puromycin (2 μg/ml) (Gemini Bio Products, West Sacramento, CA) in 5% CO2 at 37 °C. Six days after puromycin selection, cells were collected and seeded at one cell per well into 96-well plates. Disruption of the ORAI1 gene in individual colonies was detected using the Guide-it Mutation Detection Kit (Clontech Laboratories, 631443) and confirmed by sequencing, as well as western blotting and functional Ca2+ imaging assays. The ORAI1 knockout HEK293 cell line generated was named ORAI1-KO HEK293. The ORAI1 guide RNA used in this study was: 5′-GTTGCTCACCGCCTCGATGT-3′.
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2

Adipocyte-Macrophage Co-culture for Metabolic Studies

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Mouse preadipocyte (3T3-L1) and macrophage (RAW264.7) cells were purchased from the American Type Culture Collection (VA, USA) and then cultured as previously described12 (link),44 (link). Briefly, 3T3-L1 cells were normally differentiated into mature adipocytes until day 8, and in indirect co-culture, 3T3-L1 cell differentiation was induced in conditioned media from RAW264.7 cells. Oil red O staining of lipid droplets was used to monitor cell differentiation as previously described12 (link).
Human UCN3 gene cloned in pCMV6 vector tagged with Myc-DDK (OriGene, Rockville, MD, USA) was used for transfection. Myc-DDK tagged pCMV6 vector without UCN3 (OriGene, Rockville, MD, USA) was used as a control. 3T3-L1 adipocytes were transfected via electroporation using the Cell Line Nucleofector Kit (Lonza, Basel, Switzerland) according to the manufacturer’s instructions. Briefly, 2 × 106 cells were electroporated with 2 μg of plasmid using Nucleofector program, A-033. About 24 h after transfection, the cells were treated with 400 µm of PA (Sigma-Aldrich, St. Louis, MA, USA) in low glucose (1 g/l) and 1% (w/v) serum medium for 24 h with and without insulin (20 nM for 10 min). PA was prepared in 10% (w/v) fatty acid free bovine serum albumin (BSA). The cells were then processed for RNA and protein analyses or plated for glucose uptake assay.
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3

Delivering Antisense Oligonucleotides to Neuro-2a Cells

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Phosphorothioate-modified antisense oligodeoxynucleotides (ASOs) were synthesized at BioSune (Shanghai, China), and transduced into Neuro-2a cells using Lipofectamine® 3000 (Thermo Fisher Scientific) according to the manufacturer’s protocol at 100 nmol/L. For transfecting primary NPCs, ASOs were introduced into tertiary cortical NPCs derived from E14.5 CD-1 mouse cortex by nucleofection (Lonza) according to the manufacturer’s protocol at 1 μmol/L for 1 × 106 cells. Optimal programs and solutions of the Lonza Cell Line Nucleofector Kit for the ASO delivery were tested. Total RNAs were collected for RT-qPCR analysis two days post-transfection. Total protein was collected for immunoblotting analysis four days post-transfection. See Table S4 for ASO sequences.
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4

Cloning and Expression of BEND3

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The full length of the BEND3 gene was amplified from Jurkat cDNA with KOD-Plus (Toyobo, Osaka, Japan) using the primers 5′-AGACCCAAGCTTATGAACTCAACTGAATTCACCG-3′ and 5′-AATATAGCGGCCGCTCACTTCTCCACTTTCTTTGC-3′. The PCR product was cloned into the HindIII/NotI site of the pCMV-(DYKDDDDK)-N vector (Clontech, Palo Alto, CA), resulting in a FLAG-BEND3 expression plasmid. The C-terminally truncated BEND3 gene was amplified from the plasmid using the following reverse primers: BEND31–414 5′-AATATAGCGGCCGCTCAGAGGAAGACGGCAAACTCGCC-3′, BEND31–420 5′-AATATAGCGGCCGCTCAGGGGAAGAGCCGGTGGAGGAG-3′, BEND31–425 5′-AATATAGCGGCCGCTCAGTGGTCGAAGAGCTCGGGGAAG-3′, BEND31–430 5′-AATATAGCGGCCGCTCAGTAGCAGCTGTACTGTTCACCC-3′, and subcloned into the pCMV-(DYKDDDDK)-N vector. Transfection of the plasmid prepared above into Jurkat cells was accomplished using the Amaxa Nucleofector system and Cell Line Nucleofector kit (Lonza, Walkersville, MD) according to the manufacturer's protocol.
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5

Electroporation-mediated miR-126 Exosome Loading

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miR-126 mimics and miR-126 inhibitor and negative control RNA-oligonucleotides were purchased from Guangzhou Ribobio, Guangzhou, China. Electroporation of RNA-oligonucleotides into EPC-derived exosomes was performed using 4D-Nucleofector System Manual (Lonza, Basil, Switzerland) according to the manufacture’s instruction. Briefly, 10 μg exosome was precipitated and resuspended in 90 μl electroporation buffer of Lonza Cell Line Nucleofector Kit (Lonza, Basel, Switzerland), then mixed with 10 μl miR-126 mimics, miR-126 inhibitor or negative control before the mixture was transferred into cold 0.2 cm electroporation cuvettes and electroporated at 150 V/100 μF. After remove the free-floating miRNA, exosomes were re-isolated using ultracentrifugation. The final pellet (exosome) was resuspended in PBS, and stored at − 80 °C. RT-qPCR was performed to investigate the expression level of miR-126 in exosomes.
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6

Immortalized Prostate Cell Lines and PBMC Culture

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Benign prostatic hyperplasia epithelial-1 (BPH-1) cells were acquired from German Collection of Microorganisms and Cell cultures (Leibniz Institute DSMZ, Germany) and maintained in RPM-1640 medium (Gibco, USA) supplemented with 10% FBS (Gibco). SV40 large-T antigen-immortalized stromal cell line WPMY-1 was acquired from the Stem Cell Bank, Chinese Academy of Sciences (Shanghai, China) and maintained in DMEM medium (Gibco supplemented with 10% FBS). Peripheral blood mononuclear cells (PBMCs) were separated from peripheral venous blood of BPH patient using Ficoll-Paque reagent (Sigma) and density gradient centrifugation method. PBMCs were maintained in RPM-1640 medium (Gibco) supplemented with 10% FBS and activated with Leukocyte Activation Cocktail (BD Pharmingen, USA). Cells were treated with 5 ng/ml TGF-β1 (RD Biosciences, USA) or 70 ng/ml 25-hydroxyvitamin D3 (Sigma-Aldrich, USA) for 72 h. Transfection of BPH-1 and WPMY-1 cells was performed using Lipofectamine 3000 reagent (Invitrogen, USA), and transfection of PBMCs was performed using Cell Line Nucleofector Kit (Lonza, Switzerland).
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7

Modulation of Cell Signaling Pathways

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Cells were transfected with siRNA specific to Chk1, Chk2, caspase 2 (Qiagen, Valencia, CA), or scrambled siRNA (Qiagen, Valencia, CA) using Lipofectamine RNAimax (Life technologies, Grand Island, NY) for 24hrs, followed by treatment with designated drugs. The expression vectors for Chk1 and E2F1 were obtained from Addgene and used to transfect cells using either the X-tremeGENE DNA Transfection Reagent (Roche, Basel, Switzerland) or Cell Line Nucleofector Kit (Lonza, Allendale, NJ).
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8

Electroporation of siRNAs in N27 Cells

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Electroporation of small interfering RNAs (siRNAs) was conducted as per manufacturer’s instruction by using a Nucleofector device and the Cell line Nucleofector kit (Cat # VCA-1003, Lonza, Walkersville, MD). STATl-, MaplLC3- and PKCδ-specific siRNAs (Silencer Select ID #sl29043, #sl34506, and #s71696, respectively)as well as the scrambled negative control siRNA (Cat # AM4611) were purchased from Ambion/ThermoFisher Scientific (Austin, TX). Plasmids including eGFP empty vector, eGFP-WT STAT1, eGFP-STATlY701F and eGFP-STATlS727A were obtained from Addgene (Cambridge, MA). Three million of N27 cells were resuspended in 100 μl of the electroporation buffer supplied with the kit, along with 1.5 μg of gene-specific siRNA or scrambled negative siRNA. The cells were then electroporated using the nucleofector program #A23. Following electroporation, the cells were immediately transferred to pre-warmed culture medium and subsequently plated for 48 h.
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9

Transfecting bEnd.3 cells with siRNA

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Control and Trpm4 siRNA (Santa Cruz Biotechnology) was transfected into bEnd.3 cells using the Cell Line Nucleofector Kit (Lonza; Walkersville, MD).
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10

Luciferase Assay for Hypoxia Signaling

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Jurkat T cells were transfected with HIF-1α and Ubc9 promoter plasmid using Lonza Cell Line Nucleofector kit. Cells were kept on hypoxia incubator chamber (2% O2). After 24 h of transfection, cells were stimulated with PMA (50 ng/ml) and ionomycin (1 μg/ml). Lysates were prepared and luminescence was measured.
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