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7 protocols using mouse monoclonal anti myc antibody

1

Antibody Procurement for FAK, Paxillin, and GAPDH

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Rabbit polyclonal anti-phospho-Y397-FAK, anti-FAK, anti-phospho-Y118-Paxillin, and anti-GAPDH were purchased from Cell Signaling Technology (Danvers, MA, USA). Anti-integrin β1 antibodies were obtained from BD Biosciences and Santa Cruz Biotechnology, Inc. (Dallas, TX, USA). Anti-Paxillin antibody was from BD Transduction Laboratories (San Jose, CA, USA). The secondary anti-mouse and anti-rabbit antibodies tagged with HRP were purchased from Promega (Madison, WI, USA). Rabbit polyclonal anti-claudin-7 antibody was obtained from Immuno-Biological Laboratories (Gunma, Japan), and mouse monoclonal anti-Myc antibody was obtained from Thermo Fisher Scientific, Inc. (Waltham, MA, USA).
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2

Protein Detection in Virus-Infected Cells

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Transfected or infected cells were harvested at indicated time points in RIPA buffer [50 mM Tris-HCl pH 7.4, 150 mM NaCl, 1% Triton-X 100, 0.5% Na-deoxycholate, 0.1% SDS] and separated in a 10% SDS-polyacrylamide gel. PEDV N was detected with a mouse monoclonal anti-PEDV N antibody (SD 6–29, Medgene Labs) or a mouse monoclonal anti-Myc antibody (Thermo Scientific). PEDV S was detected with a mouse monoclonal anti-S1 antibody (a kind gift from Q. He, Huazhong Agricultural University). IAV nucleoprotein was detected with a mouse monoclonal anti-NP antibody (Southern Biotechnology). PRRSV N protein was detected with a rabit polyclonal anti-ORF7 antibody (Median Diagnostics). Loading control, β-actin, was detected with a mouse monoclonal anti-β-actin antibody (Cell Signaling Technology).
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3

Immunostaining of Myc-tagged Peptides

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Cells were cultured overnight on cover slides at the concentration of 3×105 cell per well in a 6-well plate and then exposed to serum starvation conditions for additional 24 h. After incubation with scramble peptide or peptide 520 (1 μM) for 24 h at 37°C, cells were fixed with 2% paraformaldehyde at 4°C for 30 min and then incubated for 1 h at room temperature in blocking buffer (5% normal goat serum in PBS) to reduce non-specific binding. Myc staining was performed by incubating cells with a mouse monoclonal anti-myc antibody (Invitrogen, 1:100) for identifying synthetic peptides. After incubation with anti-Alexa Fluor-488 (1:100, Invitrogen), slides were mounted with the Vectashield mounting medium (Vector Laboratories) and analyzed using a Leica TCS SP2 laser scanning confocal system (Leica Microsystems GmbH).
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4

Cloning and Expression of HATL5 Serine Protease

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The human HATL5 serine protease (SP) domain was cloned into the pSecTag2a plasmid (Life Technologies, Grand Island, NY) for expression and analysis in mammalian cell culture. HATL5 serine protease domain sequence from the human full-length HATL5-V5-His plasmid was PCR amplified using the following primers: 5′-CCAAGGATCCATGTTGTGGGAGACAAGTAGCCAAC-3′ and 5′-CCAAGCGGCCGCGAGTCCAGTCTTGGATGTAATCC-3′. The resulting PCR fragment was cloned into the pSecTag2a vector between the BamHI and NotI sites using standard techniques. Transfection of CHO cells (ATCC, Manassas, VA), protein extraction, and western blot analysis was performed as described above. A mouse monoclonal anti-Myc antibody (Invitrogen, Life Technologies, Grand Island, NY) was used for detection by western blotting.
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5

Protein-Protein Interaction Assay

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CoIPs were performed as previously described3 (link)–5 (link), 8 . Briefly, HEK293 cells were co-transfected using FuGENE6 transfection reagent (Promega, Madison, Wisconsin) with expression plasmids encoding Myc-micropeptide and HA-micropeptide or Myc-SERCA2a and HA-micropeptide. Whole cell lysates were prepared in CoIP buffer (20 mM NaPO4, 150 mM NaCl, 2 mM MgCl2, 0.1% NP-40, 10% Glycerol, 10 mM sodium fluoride, 0.1 mM sodium orthovanadate, 10 mM sodium pyrophosphate, 1 mM DTT and Complete protease inhibitor (Roche, Basel, Switzerland). Immunoprecipitations were carried out using 1 mg of mouse monoclonal anti-Myc antibody (Invitrogen, Carlsbad, CA) and collected with Dynabeads (Invitrogen, Carlsbad, CA). Tris/Tricine gel electrophoresis was performed using pre-cast 16.5% Mini-PROTEAN TGX gels (Bio-Rad, Hercules, CA). Standard Western blot procedures were performed on input and IP fractions using the following antibodies: HA (Invitrogen, Carlsbad, CA), Myc (Invitrogen, Carlsbad, CA) or GAPDH (Millipore, Burlington, MA).
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6

Quantitative Protein Expression Analysis

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Total protein was extracted from cells using extraction solution (50 mM Tris pH 7.4, 250 mM NaCl, 1 mM EDTA, 1% NP40 and 1 mM DTT) supplemented with protease inhibitors (Thermo Fisher Scientific, Inc.). Samples were incubated on ice for five minutes followed by centrifugation (1700 rpm, 4 °C, 5 min). Protein concentrations were determined using the Bradford method (Pierce Coomassie Protein Assay Kit, Life Technologies). Samples (20 μg protein/lane) were separated on 10–12% SDS-PAGE gels and transferred onto nitrocellulose membranes (Amersham). After blocking in PBS-Tween 0.1% buffer containing 5% non-fat milk, membranes were first incubated with mouse monoclonal anti-MYC antibody (diluted 1:5000, Invitrogen), Cyclin B1 (diluted 1:10000, Abcam) or mouse monoclonal anti-VCP antibody (diluted 1:7000, BD Biosciences) for 2 h following incubation with goat polyclonal anti-mouse Immunoglobulins/HRP secondary antibodies (diluted 1:7000, Dako) for one hour. Subsequently, blots were imaged using an enhanced chemiluminescence kit (Amersham).
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7

Investigating SERCA2a-PLN Interactions

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CoIPs were performed as previously described (Nelson et al., 2016 (link)). Briefly, HEK293 cells were co-transfected with expression plasmids encoding Myc-SERCA2a and HA-PLN in the presence of increasing concentrations of HA-DWORF or control plasmid. Whole cell lysates were prepared in CoIP buffer (20 mM NaPO4, 150 mM NaCl, 2 mM MgCl2, 0.1% NP-40, 10% Glycerol, 10 mM sodium fluoride, 0.1 mM sodium orthovanadate, 10 mM sodium pyrophosphate, 1 mM DTT and Complete protease inhibitor [Roche, Basel, Switzerland]). Immunoprecipitations were carried out using 1 mg of mouse monoclonal anti-Myc antibody (Invitrogen, Carlsbad, CA) and collected with Dynabeads (Invitrogen, Carlsbad, CA). Tris/Tricine gel electrophoresis was performed using pre-cast 16.5% Mini-PROTEAN Tris-Tricine gels (Bio-Rad, Hercules, CA). Standard western blot procedures were performed on input and IP fractions using the following antibodies: HA (Invitrogen, Carlsbad, CA), Myc (Invitrogen, Carlsbad, CA) or GAPDH (Invitrogen, Carlsbad, CA). Specific catalogue numbers for the reagents used for these CoIP studies can be found in the Key Resource Table.
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