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19 protocols using x tra adhesive slides

1

Immunohistochemistry of PUM Spheroids

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PUM spheroids were removed from the ULA plates using a cut 200-µl pipette tip at various time points and fixed in 10% neutral buffered formalin for 15 minutes. Spheroids were then suspended in 2% agar before being processed using the Bayer Tissue-Tek VIP E300 tissue processor (Bayer AG, Leverkusen, Germany). Processed spheroids were subsequently embedded in paraffin blocks and sectioned at 4 µm onto X-tra adhesive slides (Leica Biosystems, Wetzlar, Germany), for immunohistochemical (IHC) staining.
IHC staining was performed as previously described18 (link) using the Dako Pre-Treatment Module and the Dako Envision FLEX kit (Agilent Technologies, Santa Clara, CA), according to the manufacturer's instructions. Details of antibodies, antigen retrieval, and concentrations are provided in Table 1. Positive staining was visualized with an AEC substrate kit (Vector Laboratories, Burlingame, CA) according to the manufacturer's instructions. Sections were counterstained with Mayer's hematoxylin (VWR, Leighton Buzzard, UK), dyed blue with Scott's tap water (Leica), and mounted using Aquatex aqueous mounting medium (Sigma-Aldrich). Slides were scanned using the Leica Aperio CS2 slide scanner at 20× magnification.
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2

Subretinal Tissue Fixation and Sectioning

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Mice were euthanized on day zero and three weeks following subretinal transplantation; the eyes were enucleated and fixed in 4% formaldehyde (Merck, Darmstadt, Germany) overnight. The eyes were washed in PBS and then incubated for cryoprotection with 30% sucrose in PBS overnight at 4°C. Fixed tissue was embedded in OCT Tissue Freezing Medium (Scigen Scientific, Gardena, CA, USA) and frozen on dry ice. Cross-sections (10 μm) were placed on X-tra adhesive slides (Leica Biosystems, Peterborough, UK) and stored at -20°C.
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3

Histopathological and Immunohistochemical Analysis of Viral Infection

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Samples for histopathological examination were placed in 10% neutral buffered formalin for 7 days, and processed routinely to paraffin wax. Sections were cut at 5–6 μm, stained with haematoxylin and eosin (HE) and examined microscopically.
For immunohistochemistry, formalin-fixed, paraffin-embedded sections of spleen and liver, cut at 4 μm, were mounted on positively charged X-tra Adhesive slides (Leica Biosystems, UK), deparaffinised and rehydrated. Immunohistochemical staining was achieved using a BOND-MAX Immunostainer (Leica Microsystems, UK) and a Novacastra Bond Intense R (Leica Biosystems) detection kit. A heat-induced epitope retrieval cycle with buffer ER1 R (Leica Biosystems) was performed for 10 minutes. Slides were incubated with rabbit serum (4%) (Abcam, Cambridge, UK) for 20 minutes followed by an avidin/biotin blocking stage (15 minutes each) (Abcam). Polyclonal antibody raised in sheep immunised against recombinant CCHFv nucleoprotein (kindly provided by Dr John Barr, University of Leeds, UK) was incubated with the tissue for 30 minutes, followed by a biotinylated rabbit anti-sheep polyclonal antibody (Abcam) at a dilution of 1∶500, for 10 minutes. Haematoxylin was used as the counterstain. Positive and negative control slides were included. Immunolabelled slides were evaluated using light microscopy.
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4

Immunohistochemical Analysis of Zebrafish Euthanasia

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Prior to immunohistochemical analysis, the engrafted zebrafish larvae were euthanized with tricaine and fixed for 16 h in ice cold 4% paraformaldehyde in PBS. After fixation, larvae were washed with PBS containing 0.05% tween 20 (v/v) and 200 mM Glycine. Larvae were stored in the dark at 4 °C, until further processing. Fixed zebrafish larvae were arrayed in a grid and embedded in agarose. Care was taken to ensure equal localization in the x, y, and z axes. Larvae were sectioned along the ventral axis. Sections were cut at 4 µm from formalin-fixed paraffin embedded blocks of UM cell-containing zebrafish, as detailed above, and placed onto X-tra adhesive slides (Leica Biosystems, Milton Keynes, UK). Immunohistochemical (IHC) staining was performed using the Bond RXm Automated Stainer with high pH antigen retrieval and Bond polymer-refine detection systems in either red or brown chromogen [68 (link)]. Primary antibodies included mouse anti-melan-A (Agilent Technologies, Santa Clara, CA, USA) at a concentration of 1 µg/mL. Slides were counterstained with hematoxylin and mounted with a resin-based mountant. Human UM tissue was used as a positive control for each of the primary antibodies. Mouse IgG1 isotype control at a concentration of 1 µg/mL was also included in each assay [69 (link)].
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5

Subretinal Injection Mouse Eye Fixation

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One week following subretinal injection, mice were euthanized; the eyes were enucleated and fixed in 3.7% formaldehyde (Merck, Darmstadt, Germany) in PBS overnight. The eyes were then infiltrated for cryoprotection with 5% sucrose (Sigma-Aldrich) in PBS at room temperature for 1 h, followed by 30% sucrose in PBS overnight at 4°C. Fixed tissue was embedded in OCT Tissue Freezing Medium (Scigen Scientific, Gardena, CA, USA) and frozen on dry ice. Cross-sections (10 μm) were placed on X-tra adhesive slides (Leica Biosystems, Peterborough, UK) and stored at −20°C.
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6

Paraffin Sectioning of Tissue Samples

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A microtome (RM2235, Leica Biosystems, Wetzlar, Germany) was used for sectioning. Paraffin sections of 4 μm thickness were cut and transferred to X-tra™ adhesive slides (Leica Biosystems, Wetzlar, Germany).
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7

Induction and Assessment of Acid-Induced Damage in HO2E Tissues

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At day 12, one hundred microliters of HCl 0.1 N solution (pH 1.2) were applied directly on the apical surface of HO2E tissues for 1 hour ± 10 minutes while tissues were kept at 37 °C, 5% CO2 and saturated humidity.
At the end of the damage induction, the excess of the HCl solution was removed by a gentle rinse with 100 μL of PBS. The tissues were used for analysis immediately after exposure (series HCl 0.1N) or were left for 1 hour at 37 °C, 5% CO2 and saturated humidity with 100 μL of fresh PBS on the tissues’ surface (series HCl 0.1N + 1h post incubation). The two series were compared to HO2E tissues treated with PBS and used as negative control (NC). The HO2E tissues were then fixed in buffered formalin solution 10% and embedded in paraffin blocks; 5 μm sections were cut and placed onto X-tra adhesive slides (Leica Biosystems).
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8

Osteoblastic Osteosarcoma Tissue Cryosectioning

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Two samples of human bone tissue biopsies which had been previously classified by conventional pathology as osteoblastic osteosarcoma were obtained from the Children’s Cancer and Leukemia Group Tissue Bank. The samples were provided following ethical approval of this study (Project Reference 2017 BS 06). Samples were snap frozen and cryosectioned on a CM1950 cryostat (Leica Biosystems, Milton Keynes, UK). Sections were cut at 10 μm thickness and n = 3 sections of each sample from different depths of the tissues were thaw mounted onto positively charged X-tra® adhesive slides (Leica Biosystems, U.K.).
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9

Tissue Fixation and Cryosectioning

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The 6-mm submacular tissue punches from the contralateral eyes to those used in the proteomics experiment and additional genotyped tissue from other donors collected after the proteomic analysis were fixed in 4% paraformaldehyde (Merck Millipore) and buffered at pH 7.4 at room temperature for 1 to 2 h. The tissue punches were then embedded directly in full-strength optimal cutting temperature cryoprotectant compound (RA Lamb), and 10-µm tissue sections were cut using a Leica CM1950 cryostat and mounted on X-tra adhesive slides (both from Leica Biosystems). Slides were then stored at −80 °C.
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10

Immunohistochemical Analysis of Zebrafish Tumors

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Engrafted zebrafish were euthanized with tricaine overdosing (300 mg/L in zebrafish medium, for 10 minutes) and fixed for 16 h in ice-cold 4% paraformaldehyde in PBS. After fixation, larvae were washed with PBS containing 0.05% tween 20 (v/v) and 200 mM glycine. Zebrafish were aligned in x,y and z axes in agarose prior to embedding in paraffin. After paraffin-embedding, 4 µm thin sections were cut and placed onto X-tra adhesive slides (Leica Biosystems, Milton Keynes, UK). Immunohistochemical staining was performed using a Bond RXm Automated Stainer with high pH antigen retrieval and the Bond polymer-refine detection systems in either red or brown chromogen, according to the manufacturers’ recommendations (Leica Biosystems). Primary antibodies included mouse anti-melanA (Dako, Agilent, Cheshire UK) and mouse anti-BAP1 (Santa Cruz Biotechnology, USA), both at a concentration of 1 µg/ml. Slides were counterstained with hematoxylin and mounted with a resin-based mounting agent. Human UM tissue was used as a positive control for each of the primary antibodies. Mouse IgG1 isotype control at a concentration of 1 µg/ml was also included in each assay.
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