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Abi prism 7700 sequencing detection system

Manufactured by Thermo Fisher Scientific

The ABI Prism 7700 Sequence Detection System is a real-time PCR instrument designed for gene expression analysis and quantification. It utilizes fluorescent detection technology to monitor the amplification of DNA sequences during the PCR process.

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2 protocols using abi prism 7700 sequencing detection system

1

Quantitative PCR Analysis of Immune Genes

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For quantitative PCR, Taqman Reverse Transcription reagents, primers and probes were purchased from Life Technologies. STAT2, CXCL11, CCL5, IL-17A, and IFNγ mRNA expression was analyzed using Taqman 20X Assays-On-Demand expression assay mix (assay ID: Hs01013123_m1, Hs04187682_g1, Hs00982282_m1, Hs00174383_m1 and Hs00989291_m1, respectively). The probe was a FAM-labeled MGB probe with a non-fluorescent quencher. As housekeeping gene, we used RPLP0. RPLP0 mRNA expression was determined by using Taqman 20X Assays-On-Demand expression assay mix (assay ID: Hs99999902_m1). The probe was a FAM-labeled MGB probe with a non-fluorescent quencher.
PCR mastermix was Platium® qPCR Supermix-UDG (Life Technologies). Each gene was analyzed in triplicates. The real-time PCR machine was a Rotorgene-3000 (Corbett Research, Sydney, Australia). Reactions were run as singleplex. Relative gene expression levels were determined by using the relative standard curve method as outlined in User Bulletin #2 (ABI Prism 7700 sequencing detection system, Life Technologies). Briefly, a standard curve for each gene was made of 4-fold serial dilutions of total RNA from punch biopsies from the skin of psoriatic patients. The curve was then used to calculate relative amounts of target mRNA in the samples.
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2

Quantitative PCR Analysis of Inflammatory Genes

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For quantitative polymerase chain reaction (qPCR), TaqMan reverse transcription reagents, probes and primers were bought from Life Technologies. Human NFKBIZ, IL-19, IL-20, and DEFB4 mRNA expression levels were analysed using TaqMan 20X Assay-On-Demand expression assay mix (assay ID: Hs00230071_m1, Hs00604657_m1, Hs00218888_m1, Hs00175474_m1, respectively). As a reference gene, we used RPLP0 (assay ID: Hs99999902_m1). The PCR master mix was Platinum® qPCR Supermix (Life Technologies). Genes were analysed in triplicate using a RotorGene 3000 real time PCR machine (Corbett Research, Sydney, Australia) and a standard curve of each gene was established as a 4-fold dilution of total RNA and then used to determine the relative amounts of target mRNA. The relative gene expression levels were determined by implementing a relative standard curve method as defined in User Bulletin #2 (ABI Prism 7700 sequencing detection system; Life Technologies).
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