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13 protocols using rabbit anti cfos

1

Immunohistochemistry of Neural Markers

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Chicken anti-GFAP (Millipore, Catalog # AB5541, diluted 1:500)13 (link), Rabbit anti-NeuN (Cell Signaling Technology, Catalog # 12943, diluted 1:400)13 (link), Rat anti-BrdU (Biorad, Catalog # OBT0030G, diluted 1:200)30 (link), Guinea pig anti-DCX (Millipore, Catalog # AB2253, diluted 1:1000)30 (link), Rabbit anti c-Fos (Synaptic Systems, Catalog # 226 003, diluted 1:10,000)13 (link)
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2

Immunohistochemistry of Adult Mouse Brain

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Adult F1 mice were euthanized at ~P200 and brains were fixed in 4% PFA, cryoprotected in 20% sucrose, and then transferred to OCT before sectioning. Sections (10 μm) were stained for AVP, VIP (1:100; guinea pig anti-VIP, Peninsula Labs), cFos (1:700; rabbit anti-cFos, Synaptic Systems), and Sox2 as noted above for embryonic brain sections. Adult F3 mice were euthanized at ~P135, fixed, sectioned, and stained for AVP and VIP as above. Sections were imaged using a Zeiss Axioplan 2 fluorescent microscope, images were processed in Adobe Photoshop CC software, and mean pixel intensity quantification or cell counts were performed with the FIJI image processing package. In all image subfigures, scale bars on micrograph indicate the same size unless specifically noted. For all analyses, male and female mice were used in approximately equal numbers (two each when n = 4; one extra female when n = 3 or 5).
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3

Immunohistochemical Analysis of c-Fos Expression

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60 min following the last training session (Day 8 for early TRAP or Day 15 for late TRAP mice), mice were anesthetized with isoflurane and transcardially perfused with phosphate-buffered saline (PBS) and 4% paraformaldehyde (PFA). The brain was dissected out and post-fixed in 4% PFA/PBS for an additional 2 h at room temperature. The brain was transferred to a 30% sucrose/PBS solution for at least 48 h and frozen and sectioned coronally into 50 μm thick slices using a sliding microtome (Leica). Free-floating sections were permeabilized in 0.5% Triton/PBS for 30 min and blocked in 1% BSA, 10% Normal Donkey Serum, and 0.1% Triton for 1h at room temperature. Sections were incubated with primary antibodies (Rabbit anti-c-fos, 1:1000, #226–003, Synaptic Systems) in blocking solution overnight at 4°C and then with secondary antibodies (donkey anti-rabbit-Alexa488, 1:500) in PBS containing 1 % BSA for 2 h at room temperature. Washes after the primary and secondary antibody were done with PBS. Slices from motor cortex and somatosensory cortex were mounted in DAPI containing mounting media (VectaShield H-1500, Vector Laboratories) and multi-channel tiled images were obtained using a laser scanning confocal microscope (LSM900, Zeiss). Representative images shown in figures were median filtered and contrast enhanced.
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4

Immunohistochemistry of Neural Markers

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Chicken anti-GFAP (Millipore, Catalog # AB5541, diluted 1:500)13 (link), Rabbit anti-NeuN (Cell Signaling Technology, Catalog # 12943, diluted 1:400)13 (link), Rat anti-BrdU (Biorad, Catalog # OBT0030G, diluted 1:200)30 (link), Guinea pig anti-DCX (Millipore, Catalog # AB2253, diluted 1:1000)30 (link), Rabbit anti c-Fos (Synaptic Systems, Catalog # 226 003, diluted 1:10,000)13 (link)
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5

Mapping Temperature-Sensitive Neurons in LPB

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Vglut2-IRES-Cre mice were injected with AAV-retro-DIO-GFPL10 into the POA and AAV-retro-DIO-mCherry into the DMH. Four weeks following the injection, mice were exposed to a warm (38oC) or cold (10oC) environment in an incubator for two hours, then were perfused with PBS and 4% PFA and processed following the immunohistochemistry protocol described above. POA-projecting LPBVglut2 neurons were labeled with GFP. DMH-projecting LPBVglut2 neurons were labeled with mCherry. Warm- or cold-activated cFos in the LPB neurons were labeled by cFos immunostaining (rabbit anti-cFos, Synaptic systems, #226003, 1:10000) colored with Fluor 647-conjugated secondary antibody (Alexa Fluor 647 conjugated goat anti-rabbit, Invitrogen, #A21244, 1:1000). Images were captured on a Nikon A1R confocal microscope.
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6

Multimodal Neuroimaging of Brain Tissue Sections

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Mice were transcardially perfused with phosphate-buffered saline (PBS) followed by 4% paraformaldehyde. Brains were then placed in a 30% sucrose solution for 2 days. The brains were frozen in optimal cutting temperature embedding medium, and 16-μm (for FISH) or 40-μm [for immunofluorescence (IF)] coronal sections were cut with a vibratome (Leica, no. CM3050 S). For FISH experiments, the slices were mounted on SuperFrost Plus slides and air-dried. The multicolor FISH experiments were performed following the instructions of the RNAscope Fluorescent Multiplex Assay (ACD Bioscience). For IF, cryostat sections were collected and incubated overnight with blocking solution (1× PBS containing 5% goat serum, 2.5% bovine serum albumin, and 0.1% Triton X-100), then treated with the following primary antibodies, and diluted with blocking solution for 1 day at 4°C: rabbit anti–c-Fos (1:2000; Synaptic Systems, no. 226003), chicken anti-GFP (1:2000; Aves Labs, no. GFP-1010), and chicken anti-mCherry (1:2000; Novus Biologicals, no. NBP2-25158). Samples were then washed three times with washing buffer (1× PBS containing 0.1% Triton X-100) and incubated with the Alexa Fluor–conjugated secondary antibodies for 2 hours at room temperature. The sections were mounted and imaged using a Zeiss LSM800 confocal microscope or the Olympus VS120 Slide Scanning System.
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7

Immunohistochemical Analysis of Brain Tissue

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Mice were anesthetized with an overdose of pentobarbital sodium (100 mg/kg; MYM Technologies Ltd.), and perfused transcardially with phosphate-buffered saline (PBS, HyClone) followed by PBS containing 4% paraformaldehyde (PFA, Sigma). The brains were dissected, postfixed overnight at 4°C in 4% PFA, and cryoprotected in 30% sucrose in PBS at 4°C. Free-floating sections (40 μm) prepared with a cryostat (Leica CM 1950) were used for immunohistochemical staining. The tissues sections were blocked for 30 min at room temperature in PBST (0.3% Triton X-100) containing 5% normal donkey serum (NDS, Abcam) and then incubated with primary antibodies at 4°C overnight and secondary antibodies at room temperature for 2-3 h. The primary antibodies used for immunohistochemistry (IHC) were rabbit anti-GFP (1:1000, Thermo Fisher Scientific), rabbit anti-DsRed (1:1000, Clontech), and rabbit anti-c-Fos (1:2000, Synaptic System). The secondary antibodies that were used were donkey Alexa 488-conjugated anti-rabbit IgG (1:500, Jackson ImmunoResearch Laboratories) and Cy3-conjugated donkey anti-rabbit IgG (1:500, Jackson ImmunoResearch Laboratories). Images were taken using a Nikon Eclipse Ni-E fluorescence microscope. Cell counting was carried out manually or automatically using Fiji (NIH).
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8

Immunohistochemical Analysis of Mouse Brain

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After all the experiments, mice were perfused with PBS followed by 4% paraformaldehyde (PFA) in PBS. The brains were extracted, postfixed overnight in 4% PFA at 4 °C, and cryoprotected in 30% sucrose. Brains were sectioned to a thickness of 30 mm using a sliding freezing microtome (Leica SM2010R) and preserved in a cryoprotectant 30% ethylene glycol, in PBS). Free-floating sections were washed in PBS, incubated for 1 hr in blocking solution (10% normal goat serum (NGS) and 0.3% Triton X-100 in PBS), and incubated overnight at 4 °C with primary antibodies (rabbit anti-β2-AR, Thermo Scientific, Alomone Labs, 1:500; Mouse anti-CaMKIIα, 1:500; rabbit anti c-fos, Synaptic Systems, 1:500) in 0.1% Triton and 3% NGS in PBS. Sections were then washed with PBS 4 times and incubated for 2.5 h at room temperature with secondary antibodies (goal anti-rabbit, Alexa Fluor 594, 1:300; goal anti-mouse, Alexa Fluor 488, 1:300; goal anti-mouse, Alexa Fluor 594, 1:500; goal anti-rabbit, Alexa Fluor 647, 1:300; goal anti-rabbit, Alexa Fluor 405, 1:300) in PBS. Finally, sections were washed in PBS 4 times, mounted on slides and sealed with mounting medium (Fluoromount-G, eBioscience, San-Diego, CA, USA). Mounted slides were imaged using an inverted laser scanning confocal microscope (LSM 880; Carl Zeiss, Oberkochen, Germany).
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9

Immunofluorescent Brain Tissue Analysis

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Mice were deeply anesthetized with an 3% isoflurane and perfused with 20 ml ice-cold phosphate-buffered saline (PBS) containing 4% paraformaldehyde (PFA). Brains were carefully removed and postfixed in 4% PFA for 6–8 h, and cryoprotected with 30% sucrose for 48 h. The brain was 30 μm thick sections were coronally prepared using a freezing microtome (Leica CM1950). For immunofluorescent staining, the sections were incubated with PBS containing 0.3% Triton X-100 for 1 h at room temperature and subsequently allowed to react with primary antibodies (rabbit anti-glutamate, 1:500, Sigma; rabbit anti-c-Fos, 1:1000, Synaptic Systems) at 4˚C overnight. After washing with PBS, the sections were subsequently coupled with the corresponding fluorophore-conjugated secondary antibodies for 1.5 h at room temperature. Finally, after rinsing 3 times in PBS, sections were mounted with DAPI staining. Confocal images were acquired under a 10x or 20x objective with a 1024 × 1024 resolution using the Olympus confocal microscopes (FV3000, Olympus). Double fluorescence labelled cells were manually counted using ImageJ software. The Paxinos and Franklin atlas (2013) was employed to define the regions of interest.
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10

Immunofluorescent Detection of cFos in Tissue

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Sections were washed with phosphate-buffer saline 0.10 M triton X-100 (Sigma-Aldrich, Madrid, Spain; Cat# T9284) (1%) (PBST) and then incubated in a blocking solution (1.50% Donkey serum; Cat# D9663; Sigma-Aldrich, Madrid, Spain) in PBST for 30 min at room temperature. Subsequently, they were incubated with a polyclonal primary antibody, rabbit anti-cFos (1:500; Cat# 226003; Synaptic Systems, Göettingen, Germany) in PBST with Donkey serum (1.50%), in smooth agitation at 4°C for 24 h. After washing with PBST, sections were incubated with donkey anti-rabbit Alexa Fluor 555 conjugate (1:250; Cat # A-31572; Thermo Fisher Scientific, Madrid, Spain) in PBST with Donkey serum (1.50%) for 2 h at room temperature. Then, sections were rinsed with PBST and mounted with FluorSave reagent (Cat# 345789; Calbiochem; Millipore; Merck KGaA, Darmstadt, Germany).
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