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2 protocols using ubiquityl pcna lys164

1

PARP10-Mediated PCNA Regulation in Cells

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Human HeLa and RPE-1 cells were grown in Dulbecco’s modified Eagle’s medium supplemented with 10% fetal calf serum. For PARP10 gene knockout, the commercially available PARP10 CRISPR/Cas9 KO plasmid was used (Santa Cruz Biotechnology sc-406703). Single cells were FACS-sorted into 96-well plates using a BD FACSAria II instrument. Following clonal expansion, resulting mono-clonal cultures were screened by western blot for PARP10 protein levels. For exogenous PARP10 expression, pLV-puro-TRE lentiviral constructs encoding wild-type or the ΔPARP variant spanning amino acids 1–834 (lacking the PIP motif and PARP catalytic domain), with the Myc-epitope tag EQKLISEEDL at the N-terminus, were obtained from Cyagen. Infected cells, stably expressing the tetracycline transactivator element, were selected by puromycin. For induction of expression, cells were grown in the presence of 2 μg/ml doxycycline. Cell extracts, chromatin fractionation and western blot experiments were performed as previously described (14 (link),23 (link),24 (link)). Antibodies used for western blot were: PARP10 (Novus NB100–2157), GAPDH (Santa Cruz Biotechnology sc-47724), Polη (Cell Signaling Technology 13848), PCNA (Cell Signaling Technology 2586), Ubiquityl-PCNA Lys164 (Cell Signaling Technology 13439).
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2

Western Blot Analysis of DNA Repair Proteins

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Primary antibodies against p53 (Cell Signaling Technology, 9282), pRb (BD Pharmingen, 554136), FancD2 (Santa Cruz Biotechnology, FI17, sc-20022 or Abcam, ab2187), FancI (Santa Cruz Biotechnology, A-7, sc-271316), Phospho-Ser556 FancI and Phospho-Ser565-FancI (gifts from Ronald Cheung, Toshiyasu Taniguchi lab), pH2AX (Millipore, 05–636), Rad51 (Cosmo Bio Co. Ltd, 70–001), Palb2 (Bethyl Laboratories, A301-246A), Palb2 (a gift from Bing Xia, Rutgers Cancer Institute), Phospho-ATR (Ser428) (Cell Signaling Technology, 2853), Phospho-Chk1 (Ser345) (133D3) (Cell Signaling Technology, 2348), ATR (Cell Signaling Technology, 2790), CHK1 (2G1D5, Cell Signaling Technology, 2360), PCNA (PC10) (Cell Signaling Technology, 2586), Ubiquityl-PCNA (Lys164) (Cell Signaling Technology, 13439), UHRF1 (Santa Cruz Biotechnology, H-8, sc-373750), USP1 (C-term; a gift from Tony Huang, NYU School of Medicine), Cyclin A (in-house, Clurman lab), Beta actin (GeneTex, GTX110564 or Cell Signaling Technology, 5125), Vinculin (Sigma, V9131), and Histone H3 (Abcam, ab1791), GAPDH (14C10, Cell Signaling Technology, 2118)were used. Secondary antibodies were conjugated with horse radish peroxidase (mouse or rabbit, Cell Signaling Technology) or appropriate Alexa Fluor (Molecular Probes) were used.
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