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6 protocols using pe anti mouse tnf α

1

Splenocyte Isolation and Immunophenotyping

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For splenocytes culture, RPMI medium supplemented with penicillin/streptomycin (Wellgene, Seoul, Korea) and 10% fetal bovine serum (Hyclone, Pittsburgh, PA, USA) were used. Anti-mouse CD3-APC Cy7, CD8-FITC, CD45.1-PerCP Cy5.5, CD44-PE, and IFN-γ-FITC were purchased from Tonbo Bioscienses (San Diego, CA, USA). Anti-mouse TNF-α-PE and Cy7 APC-conjugated streptavidins were purchased from Biolegend (San Diego, CA, USA).
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2

Intracellular Cytokine Staining for SARS-2 and MVA-Specific CD8 T Cells

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Intracellular cytokine staining was performed as published previously [19 (link),24 (link)]. Briefly, splenocytes were stimulated with SARS-2 S peptide S268–276 (GYLQPRTFL) [19 (link)] or VACV peptide F226–34 (SPYAAGYDL) [27 (link)] to analyze SARS-2-S and MVA-specific CD8 T cells respectively. Non-treated cells and cells stimulated with PMA/ionomycin served as controls. Two hours after commencing the stimulation, Brefeldin A (Biolegend, San Diego, CA, USA) was added and cells were incubated for another 4 h. After stimulation, cells were stained extracellularly with anti-mouse CD3 phycoerythrin (PE)-Cy7, anti-mouse CD4 Brilliant Violet 421, anti-mouse CD8α Alexa Fluor 488 and purified CD16/CD32 (all from Biolegend, Supplementary Table S2). Cells were washed, fixed, permeabilized, and stained with anti-mouse IFN-γ allophycocyanin (APC) and anti-mouse TNF-α PE (both from Biolegend, Supplementary Table S2). Data were acquired using the MACSQuant VYB Flow Analyzer (Miltenyi Biotec, Bergisch Gladbach, Germany) or the NovoCyte Quanteon (Agilent Technologies, Waldbronn, Germany) and analyzed using FlowJo software (FlowJo LLC, Ashland, OR, USA).
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3

Flow Cytometry of Immune Cell Markers

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The following reagents were utilized in the experiments: PE anti-mouse CD11c (Biolegend, Cat. No. 117308, USA), APC anti-mouse CD86 (Biolegend, Cat. No. 105008, USA), FITC anti-mouse CD4 (Biolegend, Cat. No. 100406, USA), APC anti-mouse CD8a (Biolegend, Cat. No. 100712, USA), PE anti-mouse IFN-γ (Biolegend, Cat. No. 505808, USA), and PE anti-mouse TNF-α (Biolegend, Cat. No. 506306, USA).
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4

Comprehensive T-cell Phenotyping by Flow Cytometry

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FITC anti-mouse CD3 (#100204, 1:200), Pacific Blue anti-mouse CD4 (#100531, 1:200), PerCP/Cyanine5.5 anti-mouse CD4 (#100434, 1:200), FITC anti-mouse CD8a (#100706, 1:200), PE/Cyanine7 anti-mouse CD8a (#100722, 1:200), APC anti-mouse IFN-γ (#505810, 1:200), PE anti-mouse TNF-α (#506306, 1:200), PE anti-mouse CD366 (Tim-3) (#119704, 1:200), and APC anti-mouse CD279 (PD-1) (#135210, 1:200) were ordered from Biolegend.
For intracellular cytokine staining, lymphocytes (1 × 106) were stimulated with 50 ng/mL of PMA (phorbol 12-myristate 13-acetate) (#P8139, Sigma) and 1 μM of ionomycin (#13909, Sigma) in the presence of brefeldin A (#S7046, Selleck) (5 μg/mL) for 4 h. Then the stimulated cells were fixed and permeabilized with Fixation Buffer (#420801, Biolegend) for 20 min at 4°C, and stained with fluorochrome-conjugated antibody cocktails for 15 min at 4°C. Flow cytometry data were acquired on BD LSRFortessa X-20 and analyzed with FlowJo software.
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5

Cytokine Profile Analysis in Mice

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The relative number of CD4+TNF-α+, CD8+TNF-α+, CD4+IFN-γ+, CD8 IFN-γ+ and IL-6+ were measured using flow cytometry. The filtered mixture of spleen and sterile PBS was centrifuged for five min at 2500 rpm. The supernatant was discarded, then the pellet was added with 1 mL of sterile PBS and resuspended. The resulting suspension (50 μL) was transferred to a 1.5 mL microtube. The pellet, which had been transferred, was then added with specific antibodies (PE anti-mouse TNF-α, PE anti-mouse IFN-γ, PE-conjugated anti-mouse IL-6, anti-CD4-FITC, anti-CD8-PE; all from BioLegend, San Diego, United States), and homogenized using a vortex. Following incubation in a dark room for 20 minutes, the suspension was centrifuged for five minutes at 2500 rpm. The samples were analyzed using flow cytometry with flow cytometry FACS Calibur (Thermo Fischer, Massachusetts, United States).
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6

Multiparametric Analysis of Antigen-Specific T Cells

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Fresh mouse splenocytes were plated in a 96 round-bottom well plate (Costar, Corning Inc., Corning, NY, USA) at a density of 2 × 106 cells/well and incubated overnight with either 1 µM/peptide of the ZIKV E peptide pool, or 5 µM of YFV-17D NS3 ATLTYRML or 50 µg/ml of Vero E6 cell lysate. After treatment with 5 µg/ml brefeldin A (Biolegend, San Diego, CA, USA) for 2 h, the splenocytes were stained for viability with Zombie Aqua™ (Biolegend) (1:200 dilution in PBS) for 15 min. Subsequently, extracellular markers CD3 (4 µg/ml eFluor® 450 anti-mouse CD3 antibody, ThermoFisher, Waltham, MA, USA) and CD8 (2 µg/ml APC/Cy7 anti-mouse CD8a antibody, Biolegend) were stained and cells were fixed in 2% paraformaldehyde (Sigma-Aldrich, St. Louis, MO, USA). Finally, splenocytes were permeabilized with 0.1% saponin before intracellular staining for IFN-γ (2 µg/ml APC anti-mouse IFN-γ, Biolegend), TNF-α (6.5 µg/ml PE anti-mouse TNF-α, Biolegend) and granzyme B (5 µg/ml FITC anti-human/mouse granzyme B, Biolegend). Samples were analyzed on a BD LSRFortessa™ X-20 (Becton Dickinson, Franklin Lakes, NJ, USA). Percentages of responding CD4+ or CD8+ T cells were calculated by subtracting the percentage of responders from non-stimulated samples (incubated with non-infected Vero E6 cell lysates) from corresponding stimulated samples.
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