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The SKMM2 is a laboratory equipment developed by the Leibniz Institute DSMZ. It is a technical device used for specific scientific purposes. The core function of the SKMM2 is to perform tasks related to the research and analysis activities conducted at the institute. No further details about the intended use or capabilities of the SKMM2 can be provided in an unbiased and factual manner.

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10 protocols using skmm2

1

Culturing Human Myeloma Cell Lines

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XG human myeloma cell lines (HMCLs) were cultured in the presence of recombinant IL-6 as previously described [28 (link)]. XG7 Melphalan-resistant cell line was derived from the sensitive parental XG7 cells [29 (link)]. JJN3 was kindly provided by Dr Van Riet (Brussels, Belgium), JIM3 by Dr MacLennan (Birmingham, UK) and MM1S by Dr S. Rosen (Chicago, USA). AMO-1, LP1, L363, U266, OPM2, and SKMM2 were purchased from DSMZ (Braunsweig, Germany) and RPMI8226 from ATTC (Rockville, MD, USA). HMCLs were authenticated according to their short tandem repeat profiling and their gene expression profiling using Affymetrix U133 plus 2.0 microarrays deposited in the ArrayExpress public database under accession numbers E-TABM-937 and E-TABM-1088 [28 (link)].
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2

Characterization of Human Myeloma Cell Lines

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XGs human myeloma cell lines (HMCLs) were obtained as previously described [27 (link),28 (link)]. AMO-1, LP1, L363, OPM2, MOLP2, MOLP8, Lopra, and SKMM2 were purchased from DSMZ (Braunsweig, Germany), and RPMI8226 was purchased from ATCC (American Tissue Culture Collection, Rockville, MD, USA). JJN3 was kindly provided by Dr. Van Riet (Bruxelles, Belgium), and was provided MM1S by Dr. S. Rosen (Chicago, USA). HMCLs were authenticated according to their short tandem repeat profiling and their gene expression profiling using Affymetrix U133 plus 2.0 microarrays deposited in the ArrayExpress public database under accession numbers E-TABM-937 and E-TABM-1088.
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3

Establishing Bortezomib Resistant Multiple Myeloma

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RPMI-8226, U266, and NCI-H929 MM cell lines were obtained from American Type Cell Culture Collection (Manassas, VA). LP-1, KMS-12-BM, SKMM-2, and OPM-2 were purchased from the DSMZ (Braunschweig, Germany). MM cell lines were maintained in RPMI-1640 media supplemented with 10% fetal bovine serum in a humidified incubator 37(C with 5% CO2. To establish human MM cells resistant to BZ, RPMI-8226 and U266 cells were continuously cultured in gradually increasing concentrations of BZ (initially 1 nM and increasing in increments of 1 nM over one year) to 50 nM (RPMI-8226) and 20 nM (U266), respectively. Normal peripheral blood mononuclear cells (PBMCs) were purchased from Stemcell Technologies (Vancouver, BC). Primary human MM cells were obtained from the bone marrow of MM patients at the CTRC/UTHSCSA after obtaining informed consent in accordance with an approved IRB protocol. CD138+ cells were selected using beads from Miltenyi Biotec (Auburn, CA).
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4

Obtaining and Authenticating Human Myeloma Cell Lines

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XG HMCLs were obtained as previously described [18 (link)]. JJN3 was kindly provided by Dr. Van Riet (Brussels, Belgium), JIM3 by Dr. MacLennan (Birmingham, UK), and MM1S by Dr. S. Rosen (Chicago, USA). AMO-1, LP1, L363, U266, OPM2, and SKMM2 were purchased from DSMZ (Braunsweig, Germany) and RPMI8226 from ATTC (Rockville, MD, USA). All HMCLs derived in our laboratory were cultured in the presence of recombinant IL-6. HMCLs were authenticated according to their short tandem repeat profiling and their gene expression profiling using Affymetrix U133 plus 2.0 microarrays deposited in the ArrayExpress public database under accession numbers E-TABM-937 and E-TABM-1088 [18 (link)].
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5

Myeloma Cell Lines and Controls

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XGs human myeloma cell lines (HMCLs) were obtained as previously described 8 (link). AMO-1, LP1, L363, OPM2, MOLP2, MOLP8, Lopra and SKMM2 were purchased from DSMZ (Braunsweig, Germany) and RPMI8226 from ATCC (American Tissue Culture Collection, Rockville, MD, USA). JJN3 was kindly provided by Dr. Van Riet (Bruxelles, Belgium) and MM1S by Dr. S. Rosen (Chicago, USA). HMCLs were authenticated according to their short tandem repeat profiling and their gene expression profiling using Affymetrix U133 plus 2.0 microarrays deposited in the ArrayExpress public database under accession numbers E-TABM-937 and E-TABM-1088. HMCLs characteristics, obtained from previously published analysis results 8 (link), are available in Table S1. EBV-immortalized B-cells from 8 different patients have been used as control cells. The patients are those from whom the XG1, XG3, XG5, XG10, XG13, XG14, XG16 and XG19 cell lines were generated.
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6

Human Myeloma Cell Lines and Primary Samples

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XG human myeloma cell lines were obtained as previously described 16 (link). AMO-1, OPM2 and SKMM2 were purchased from DSMZ (Braunschweig, Germany) and RPMI8226 from ATCC (Manassas, USA). JJN3 was kindly provided by Dr.Van Riet (Brussels, Belgium), and KMS-12-BM by Dr Otsuki (Okayama, Japan). HMCLs characteristics are available in Table 1.
Bone marrow samples were collected after patient's written informed consent in accordance with the Declaration of Helsinki and institutional research board approval from Montpellier University Hospital. Bone marrow was collected from 69 patients at diagnosis and 28 patients at relapse, this cohort was called Montpellier cohort. MM cells of patients were purified using anti-CD138 MACS microbeads (Miltenyi Biotec, Bergisch Gladbach, Germany). We also used RNA sequencing data of 674 newly diagnosed MM patients with longitudinal follow-up from the Multiple Myeloma Research Foundation CoMMpass trial (NCT01454297; version IA11a), termed in the following CoMMpass cohort.
Normal plasma cells were generated using a 3-step in vitro model starting from purified memory B cells from 3 different healthy donors as reported 17 (link),18 (link).
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7

Characterization of Human Myeloma Cell Lines

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All (HMCLs) were previously characterized.12,22 (link) The HMCLs BCN; NAN1, −3, −7, −8 and −9; SBN; and XG1, −2, −5, −6, −7 and −11 were derived in Nantes or Montpellier laboratories in the presence of interleukin-6 (IL-6). KMS11, KMS12-PE and KMM1 HMCLs were kindly provided by Dr. Otsuki (Kurashiki, Japan), JJN3 was kindly provided by Dr. Van Riet (Brussels, Belgium), JIM3 was kindly provided by Dr. MacLennan (Birmingham, UK), Karpas 620 was kindly provided by Dr. Karpas (Cambridge, UK) and MM1S was kindly provided by Dr. Rosen (Chicago, IL). AMO1, LP1, L363, NCI-H929, SKMM2, U266 and OPM2 were purchased from DSMZ (Braunsweig, Germany). All HMCLs were cultured in RPMI1640 supplemented with 5% fetal calf serum (FCS). Cell cultures from BCN, NAN, SBN and XG cells were additionally supplemented with 3 ng/mL IL-6. Blood or bone marrow samples from patients were collected after informed consent at the Department of Hematology, University Hospital of Nantes. Experiments with primary myeloma cells were carried out using unpurified or purified (CD138+) myeloma cells, depending on the myeloma infiltration and the total number of cells. Chromosome abnormalities were assessed by fluorescence in situ hybridization (FISH).
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8

Authenticating Multiple Myeloma Cell Lines

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XG1, XG2, XG3, XG4, XG5, XG6, XG7, XG10, XG11, XG12, XG13, XG14, XG16, XG19, XG20 and XG21 HMCLs were obtained as previously described.36 (link) AMO-1, LP1, L363, U266, OPM2 and SKMM2 were purchased from DSMZ (Braunschweig, Germany) and RPMI8226 from ATTC (Rockville, MD, USA). HMCLs were authenticated according to their short tandem repeat profiling and their gene expression profiling using Affymetrix U133 plus 2.0 microarrays deposited in the ArrayExpress public database under accession numbers E-TABM-937 and E-TABM-1088.36 (link)
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9

Establishment and Characterization of Human Myeloma Cell Lines

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XG human myeloma cell lines were obtained as previously described [15 (link)]. JJN3 was kindly provided by Dr. Van Riet (Brussels, Belgium), JIM3 by Dr. MacLennan (Birmingham, UK), and MM1S by Dr. S. Rosen (Chicago, USA). AMO-1, LP1, L363, U266, OPM2, and SKMM2 were purchased from DSMZ (Braunsweig, Germany) and RPMI8226 from ATTC (Rockville, MD, USA). All HMCLs derived in our laboratory were cultured in the presence of recombinant IL-6. HMCLs were authenticated according to their short tandem repeat profiling and their gene expression profiling using Affymetrix U133 plus 2.0 microarrays deposited in the ArrayExpress public database under accession numbers E-TABM-937 and E-TABM-1088 [15 (link)].
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10

Characterization of Multiple Myeloma Cell Lines

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HMCLs BCN, MDN, SBN, NAN-1, -6, -7, -8, -10 and XG-1, -2, -3, -5, -6, -7 were derived in our laboratory from primary myeloma cells in the presence of interleukin (IL)-6. ANBL-6 was kindly provided by Dr. Jelinek (Rochester, MN). KMS11, KMS12-BM, KMS12-PE, and KMM1 were kindly provided by Dr. Otsuki (Kurashiki, Japan). JJN3, JIM3, Karpas620, and MM.1S were, respectively, kindly provided by Drs. Van Riet (Brussels, Belgium), MacLennan (Birmingham, UK), Karpas (Cambridge, UK), and S. Rosen (Chicago, IL). AMO1, LP1, L363, NCI-H929, SKMM2, U266, and OPM2 were purchased from the DSMZ, and RPMI8226 from American Type Culture Collection. Each HMCL was characterized and identified as previously described [41 (link)–43 ].
After obtaining informed consent, blood or bone marrow samples from MM patients were collected at the Department of Hematology at the University Hospital of Nantes or at the Intergroupe Francophone du Myélome (ethical approval n° DC-2011–1399, Pr Rodat). Plasma cells were purified with CD138 immunomagnetic beads. The purity of the plasma cells was greater than 90%, as assessed morphologically or by CD138 staining.
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