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14 protocols using bay11 7085

1

Cell Cycle Synchronization and Analysis

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Cells were synchronized at G1/S phase transition by double thymidine block, as previously described.48 (link) Subsequently, at the indicated timepoints, cells were collected for FACS and western blot analysis. Briefly, synchronized cells were centrifuged and ressuspended in ice-cold PBS and fixed under gentle vortexing by dropwise addition of an equal volume of ice-cold 80% ethanol (−20 °C), followed by 30 min on ice. Subsequently, samples were stored at 4 °C for at least 18 h, followed by incubation with RNase A solution (10 μg/ml, in PBS) for 30 min at 37 °C. Finally, propidium iodide (25 μg/ml) was added to the samples for 5 min, before flow cytometry analysis. In selected experiments, cells were incubated with ERK5 inhibitor XMD8-92 (#4132, TOCRIS Bioscience, Bristol, UK) or NF-κB inhibitor BAY11-7085 (#sc-202490, from Santa Cruz Biotechnology, Inc.) at 4 μM, or vehicle (DMSO), when cells were subjected to the second thymidine block, and the presence of inhibitors was maintained until the indicated endpoints.
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2

Hypothalamic Inflammation and Feeding Regulation

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Mice were anesthetized and implanted with a guide cannula (Plastics One) into the third ventricle at the midline coordinates of 0.5 mm posterior to the bregma and 5 mm below the surface of the skull. After at least 1 week of recovery from surgery, 3 μl vehicle (artificial cerebrospinal fluid, aCSF) with or without inhibitors was injected through the cannula into the third ventricle. To determine the role of diabetes-induced hypothalamic inflammation, PDK2, and lactic acid production in feeding behavior and related pathologies, Bay 11-7085 (an inhibitor of I-κB phosphorylation, Santa Cruz Biotechnology, 1 µg), Ki20227 (an inhibitor of CSF1R, Tocris Bioscience, 1 µg), 4-[3-chloro-4-[[(2 R)-3,3,3-trifluoro-2-hydroxy-2-methylpropanoyl]amino]phenyl]sulfonyl-N,N-dimethylbenzamide (AZD7545; a PDK2 inhibitor; 6.4 nM of CSF concentration), and 3-[[3-[(Cyclopropylamino)sulfonyl]-7-(2,4-dimethoxy-5-pyrimidinyl)-4-quinolinyl]amino]-5-(3,5-difluorophenoxy) benzoic acid (GSK2837808A, a small-molecule inhibitor of LDH; 2 µM of CSF concentration) or sodium oxamate (Oxamate, 25 µg) or vehicle (aCSF or 1% (v/v) DMSO) solution were delivered by multiple icv injections to mice. Daily 12-h food intake in the dark phase and body weight were measured at the time of injections.
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3

Antibody and Inhibitor Procurement

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Antibodies were purchased: AR (Santa Cruz Biotechnology; Santa Cruz, CA); Akt and PTEN (Cell Signaling Technology; Danvers, MA); β-actin (Sigma; St. Louis, MO); and Histone H1 (Millipore; Billerica, MA). Inhibitors were purchased: Cyclohexamide, MG132, and PD98059 (Sigma); JNK Inhibitor II (Fisher Scientific, Waltham, MA); BAY 11–7085 (Santa Cruz Biotechnology); Enzalutamide (Selleck Chemicals, Houston, TX).
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4

Modulation of NSCLC and Cancer Cell Lines

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Human H1975/EGFR(L858R/T790M), H1299/wild-type EGFR and H1650/EGFR(delE746-A750) NSCLC cells (ATCC) were cultured in RPMI1640 medium supplemented with 10% heat-inactivated fetal bovine serum (FBS), 2 mM L-glutamine, 100 units/ml penicillin and 100 µg/ml streptomycin. Human MCF-7 breast cancer and LNCaP prostate cancer cells were grown in DMEM and RPMI-1640 medium, respectively, each containing FBS, glutamine and antibiotics. H1975, H1299 and H1650 cells were transduced with a lentiviral vector expressing either a MUC1 shRNA (Sigma) or a scrambled control shRNA (CshRNA; Sigma) vector as previously described (23 ). H1975 cells were also (i) transduced with lentiviral vectors expressing MUC1-C, MUC1-C(AQA) or LIN28B shRNA (Sigma), and (ii) transfected with a control siRNA or p65 siRNA. MCF-7 cells were stably transduced with a control lentiviral vector or one expressing MUC1-C as described (33 (link)). LNCaP cells were stably transfected with a control pHR-CMV vector or one expressing MUC1-C (34 (link)). Cells were treated with the MUC1-C inhibitor peptide GO-203, a control peptide CP-2 (35 ) or with the NF-κB pathway inhibitor BAY11-7085 (Santa Cruz Biotechnology).
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5

Breast, Lung, and Prostate Cancer Cell Culture

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Human BT-549 breast cancer, H460 NSCLC, A549 NSCLC and DU145 prostate cancer cells were grown in RPMI1640 medium (ATCC, Manassas, VA, USA). MDA-MB-231 and MDA-MB-468 breast cells were cultured in Dulbecco’s modified Eagle’s medium (DMEM) (Corning, Manassas, VA, USA). BT-20 cells were cultured in Eagle’s Minimum Essential Medium (EMEM) (ATCC). Media were supplemented with 10% heat-inactivated fetal bovine serum (HI-FBS), 100 U/ml penicillin and 100 μg/ml streptomycin. Cells were transduced to stably express a control scrambled CshRNA or a MUC1 shRNA40 (link). Cells stably expressing an empty vector or MUC1-C were generated as described63 (link). Cells were treated with the MUC1-C inhibitor GO-203 or the control CP-2 peptide38 (link). Cells were also treated with the NF-κB inhibitor BAY-11-7085 (Santa Cruz Biotechnology, Dallas, TX, USA) and the EZH2 inhibitor GSK343 (SelleckChem, Houston, TX, USA). Authentication of cells was performed by short tandem repeat (STR) analysis. Cell were monitored for mycoplasma contamination using the MycoAlert® Mycoplasma Detection Kit (Lonza, Rockland, ME, USA).
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6

Exploring Therapeutic Targets in Multiple Myeloma

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RPMI8266, OPM-2, KMS-12-PE, U266 and NCIH929 (ATCC, Manassas, VA, USA) cells were cultured in RPMI1640 medium supplemented with 10% heat-inactivated fetal bovine serum (FBS), 100 U/mL penicillin, 100 μg/mL streptomycin and 2 mM L-glutamine. Primary CD138+ MM cells from 2 patients with refractory disease were isolated by Ficoll gradient separation using CD138 MicroBeads (Miltenyi Biotec, Somerville, MA, USA) and maintained in long-term culture in IMDM medium supplemented with 20% heat-inactivated FBS as described [8 (link), 47 (link), 48 (link), 49 (link)]. Cells were treated with (i) doxycycline (DOX; Sigma, St. Louis, MO, USA), (ii) MUC1-C inhibitor GO-203 ([R]9-CQCRRKN) or inactive control peptide CP-2 ([R]9-AQARRKN), (iii) BRD4 inhibitor JQ1 [50 (link)], and (iv) NF-κB p65 inhibitor BAY-11-7085 (Santa Cruz Biotechnology, Dallas, TX, USA) or vehicle control dimethylsulfoxide (DMSO; Sigma).
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7

Toll-like Receptor Signaling in GC Cells

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GC cells were grown in 6‐well plates in triplicate. After overnight starvation, cells were treated with phosphate‐buffered saline (PBS control), Pam3CSK4 (P3C, InvivoGen), Lipopolysaccharides from Escherichia coli O111:B4 (LPS, Sigma) or FSL‐1 (Pam2CGDPKHPKSF, InvivoGen) at the indicated concentrations after a time course. For transfection experiments, GC cells at 50–60% confluence in 6‐well plates were transiently transfected with 10 nM nontarget control or siRNA targeting SOD2 gene (Ambion) using Lipofectamine 3000 (ThermoFisher). For signaling pathway analysis, cells were pre‐treated for 1 h with either DMSO vehicle; the JAK inhibitor, CYT387 (Selleck); the JNK inhibitor, SP600125 (Selleck); the ERK inhibitor, U0126 (InvivoGen); the PI3K inhibitor, Wortmannin (Sigma); the NF‐κB inhibitor, BAY11‐7085 (Santa Cruz Biotechnology); or the P38 inhibitor, SB203580 (Selleck) at the indicated concentrations prior to stimulation with P3C or PBS. Cell viability assay in response to TLR agonists’ treatment was also conducted using the MTT assay (Invitrogen) in 96‐well plate after the manufacturer's instructions.
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8

Modulating NF-κB Pathway in Leukemia Cells

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Human THP-1 (ATCC) and MOLM-14 (ATCC) cells were cultured in RPMI1640 medium supplemented with 10% heat-inactivated fetal bovine serum, 100 units/ml penicillin, 100 ug/ml streptomycin and 2 mM L-glutamine. Authenticity of the cells was confirmed by short tandem repeat (STR) analysis [44 (link)]. Cells were infected with lentiviral vectors expressing a MUC1 shRNA, NF-κB p65 shRNA or scrambled control shRNA vector (Sigma). Cells were selected and maintained in puromycin [40 (link)]. Cells were treated with the NF-κB pathway inhibitor BAY-11-7085 (Santa Cruz Biotechnology) or DMSO as a vehicle control.
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9

Colon Cancer Cell Manipulation and Inhibition

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Human SK-CO-1 colon cancer cells (ATCC HTB-39) were cultured in EMEM medium (ATCC) containing 10% heat-inactivated fetal bovine serum (HI-FBS). Human SW620 colon cancer cells (ATCC CCL-227) were grown in RPMI1640 medium (ATCC) containing 10% HI-FBS. Human HCT116 (ATCC CCL-247) and LoVo (ATCC CCL-229) colon cancer cells were cultured in DMEM (Corning) and F-12K (ATCC) medium, respectively, each containing 10% HI-FBS. Cells were infected with lentiviruses expressing a MUC1 shRNA (Sigma), a control scrambled CshRNA (Sigma), or MUC1-C (47 ). Cells were treated with (i) the MUC1-C inhibitor GO-203 or a control peptide CP-2 (48 ), and (ii) the NF-κB inhibitor BAY11-7085 (Santa Cruz Biotechnology).
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10

Manipulating Breast Cancer Cell Signaling

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Human MCF-7 and MDA-MB-468 breast cancer cells were cultured in DMEM with 10% heat-inactivated fetal bovine serum (FBS), 100 units/ml penicillin, 100 μg/ml streptomycin, and 2 mM L-glutamine. SKBR3 breast cancer cells were grown in McCoy's 5A medium containing FBS, antibiotics and glutamine. MCF-7, MDA-MB-468 and SKBR3 cells were transduced with a lentiviral vector expressing a MUC1 shRNA (Sigma), a NF-κB p65 shRNA (Sigma) or, as a control, with a scrambled shRNA vector (CshRNA) as described [23 ]. MCF-7 cells were stably transfected with a control pHR-CMV vector or one expressing MUC1-C [23 ]. Cells were treated with the MUC1-C inhibitor GO-203, the control CP-2 [20 ] or the NF-κB pathway inhibitor BAY11-7085 (Santa Cruz Biotechnology).
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