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4 protocols using dhg00

1

Quantifying Amniotic Membrane Protein Content

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The total protein in each batch of AMEED was assessed
using a standard Bradford protein assay. Briefly, 20 µl of
each sample and a diluted standard that contained 10 µg/
µl .-globulin were added to the wells of a 96-well plate
(in duplicate), followed by the addition of 500 µl Bradford
buffer (5000006, Bio-Rad Laboratories, Inc., Hercules,
CA, USA) to each well and mixed. The optical density
at 595 nm was then measured using a spectrophotometer
(Multiskan Spectrum, Thermo Fisher Scientific Oy,
Vantaa, Finland).
The concentrations of EGF, KGF, hepatocyte growth
factor (HGF), and interleukin-1 receptor antagonist (IL1RA),
as important amniotic membrane proteins necessary
for epithelial regeneration (14 (link)), were assessed using
commercially available enzyme-linked immunosorbent
assay (ELISA) kits (Catalogue no.: DEG00, DKG00,
DHG00, and DRA00B, R & D Systems Inc., Minneapolis,
MN, USA) according to the manufacturer’s protocols.
Four batches of AMEED were used for this growth factor
analysis. The stability of the growth factors was tested
after one month to one year of storage at -70°C, after 7
days of storage in a refrigerator (2-8°C), and after 2 days
of storage at room temperature.
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2

Quantification of Growth Factors

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Conditioned media aliquots were collected before harvesting the cells and stored at −80 °C until they were assayed. Levels of VEGF (Life Technology KHG0111), epidermal growth factor (EGF R&D Systems, Minneapolis, MN, USA, DEG00), hepatocyte growth factor (HGF, R&D Systems, DHG00) and insulin-like growth factor 1 (IGF-1, R&D Systems, DG100) were measured by enzyme-linked immunosorbent assays (ELISAs) according to manufacturer protocols.
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3

MET Alteration Detection Protocols

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Patients were selected based on Clinical Laboratory Improvement
Amendments–certified laboratory testing for MET alterations by RT-PCR,
IHC, FISH, or next-generation sequencing (NGS; MET exon 14
alteration or amplification). Additional testing was done by Foundation Medicine
(Boston, MA) for NGS and Clarient (Aliso Viejo, CA) for IHC and FISH. MET IHC
positivity was defined as a score of 2+ or 3+, indicating ≥ 50%
of tumor cells with moderate- or strong-intensity staining, respectively.
Analysis of HGF levels was conducted in duplicate by enzyme-linked immunosorbent
assay (R&D Systems, Minneapolis, MN; Cat DHG00) as per the
manufacturer’s instructions.
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4

Quantification of Neurotrophic Factors and Cytokines in Brain Tissue

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Frozen samples of brain tissue from the periventricular zone were homogenized and centrifuged at 8,000 × g for 20 min at 4°C. The protein content of the supernatant was measured using the Bradford method with bovine serum albumin (Sigma-Aldrich) as a standard. Human-and rat-specific brain-derived neurotrophic factor (BDNF; #DBD00, Human BDNF Quantikine ELISA Kit; R&D Systems and #KA0330, BDNF Rat ELISA Kit; Abnova, Taipei, Taiwan) and hepatocyte growth factor (HGF; #DHG00, Human HGF Quantikine ELISA Kit; R&D Systems and #MHG00, Mouse/Rat HGF Quantikine ELISA Kit; R&D Systems) concentrations were also measured using the ELISA kit according to the manufacturer's protocol. Interleukin (IL)-1a, IL-1b, IL-6, and tumor necrosis factor-a (TNF-a) concentrations in tissue homogenates were measured using the Milliplex MAP ELISA Kit according to the manufacturer's protocol (Millipore, Billerica, MA, USA) (1) .
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