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4 protocols using fix and perm cell fixation and cell permeabilization kit

1

Multiparametric Flow Cytometry Analysis

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GFP, Annexin V (APC, BD Bioscience 550474), γH2AX (Alexa Fluor 647, BD Bioscience 560447), THY-1 (PE anti-human CD90 (Biolegend 328110)) and CD75 (Purified anti-human CD75 (LN-1, 326901 Biolegend) levels were analyzed with an LSR II FACS (BD Biosciences) using Diva v6.1.2 (BD Biosciences) and FlowJo software v10 (TreeStar). Cell permeabilization was performed using the Fix and Perm Cell fixation and cell permeabilization Kit (ThermoFisher Scientific, GAS003) following the manufacturer instructions. Goat anti-Mouse IgM Heavy Chain Secondary Antibody, Alexa Fluor® 647 conjugate (1:500) (A-21238, Thermo Fisher) was used as secondary antibody.
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2

Measuring Th1 Differentiation and EBV-specific Effector T Cell Activity

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Th1 differentiation was assessed by co-culture of sorted naive CD4+ T cells and infected B cells 5 dpi. 1 × 105 naive CD4+ T cells stained with CellTrace Violet (Thermo Fischer Scientific) and 0.5 or 1 × 105 infected B cells were cultured in 96-well plates with Dynabeads Human T-Activator CD3/CD28 (Thermo Fischer Scientific) and cultivated for 7 d. The neutralizing antibody against IL12B (C8.6; BioLegend) or the corresponding isotype control antibody (MOPC-21; BioLegend) were added for certain experiments at 5 µg/ml. Cells were restimulated with PMA and ionomycin (Cell Stimulation Cocktail; eBioscience) for 5 h and treated with Brefeldin A and Monensin (BioLegend) for 2.5 h before fixation. Th1 population was measured by intracellular IFN-γ staining with FIX and PERM Cell Fixation and Cell Permeabilization kit (Thermo Fischer Scientific) and subsequent flow cytometry analysis. The Th1 population was defined as IFN-γ+ T cells in the fraction of proliferating T cells identified via CellTrace Violet staining. EBV-specific effector T cells’ activities were measured with ELISA and Calcein release assays. For IFN-γ detection from T cells, effector and target cells were seeded at 5 × 104 cell per ml (1:1 ratio) each and co-cultured for 16 h in a 96-well plate (V bottom). IFN-γ levels were detected with ELISA. IFN-γ concentrations <16 pg/ml were considered as not detected.
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3

Multicolor Flow Cytometry Characterization

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Cells were analyzed with an LSR II flow cytometer (BD Biosciences) using Diva v8.0.1 (BD Biosciences) or a Miltenyi MACSQuant VYB analyzer. Cell permeabilization was performed using the Fix and Perm Cell Fixation and Cell Permeabilization Kit (ThermoFisher Scientific, GAS003) following the manufacturer’s instructions. Primary antibodies used were NANOG (D73G4) XP® Rabbit mAb (1:100) (Alexa Fluor® 647 Conjugate, Cell signaling 5448), THY-1 (1:100) (PE anti-human CD90 (Biolegend 328110)), KDM4B (1:100) (Abcam ab191434), CD73 (1:100) (APC/Cy7 anti-human CD73 Antibody (Biolegend 344021)), CD105 (1:100) (APC anti-human CD105 Antibody (Biolegend 323207), (1:100) CD146 (APC anti-human CD146 (1:100) (Biolegend 361015)), CD144 (1:100) (PE anti-human CD144 Antibody (Biolegend 348505), CD34 (1:100) (PE anti-human CD34 Antibody (Biolegend 343605).
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4

Multiparametric Flow Cytometry Analysis

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GFP, Annexin V (APC, BD Bioscience 550474), γH2AX (Alexa Fluor 647, BD Bioscience 560447), THY-1 (PE anti-human CD90 (Biolegend 328110)) and CD75 (Purified anti-human CD75 (LN-1, 326901 Biolegend) levels were analyzed with an LSR II FACS (BD Biosciences) using Diva v6.1.2 (BD Biosciences) and FlowJo software v10 (TreeStar). Cell permeabilization was performed using the Fix and Perm Cell fixation and cell permeabilization Kit (ThermoFisher Scientific, GAS003) following the manufacturer instructions. Goat anti-Mouse IgM Heavy Chain Secondary Antibody, Alexa Fluor® 647 conjugate (1:500) (A-21238, Thermo Fisher) was used as secondary antibody.
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