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7 protocols using anti cd4 percp clone sk3

1

Phenotyping of Human T Cell Subsets

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Staining with anti-HLA-A2-PE (clone BB7.2, BD Biosciences, cat. no. 558570), anti-HLA-A2-FITC (clone BB7.2, BD Biosciences, cat. no. 551285), anti-CD4-PerCP (clone SK3, BD Biosciences, cat. no. 345770), and/or anti-CD25-PE (clone 4E3, Miltenyi Biotec; cat. no. 130-091-024) was performed in the dark with antibody dilutions in FACS buffer (PBS/0.5% HSA) for 15 min at 20°C or 30 min at 4°C. Cells were washed once with PBS, resuspended, and measured in FACS buffer. For intracellular FOXP3 staining, cells were first stained with surface antibodies as described earlier, followed by fixable viability dye-eFlour780 (ebioscience, cat. no. 65-0865-14) staining enabling gating on live cells. Subsequently, fixation, permeabilization, and intracellular staining was performed with the Foxp3 Staining Buffer Set (ebioscience, cat. no. 00-5523-00) using anti-FOXP3-APC (clone 236A/E7, ebioscience, cat. no. 17-4777-42) or equally concentrated mIgG1κ APC isotype control (clone P3.6.2.8.1, ebioscience, cat. no. 17-4714-42) antibodies. Acquisition was performed on a CyAn ADP 9 Color Analyzer (Beckman Coulter), and parameter compensation was performed automatically with the CyAn software (Summit) tool using single stained samples containing positive cells. Flow cytometry data were analyzed using the FlowJo software (Tree Star).
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2

Phenotyping CD4+ T cell subsets

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The phenotype of CD4+ T cells was determined based on CD25 and Foxp3 markers. Surface antigens CD4 and CD25 were stained with anti-CD4-PerCP (clone SK 3, BD Biosciences, USA) and anti-CD25-FITC (clone M-251; BD Biosciences) monoclonal antibodies in the dark for 20 min at 4 °C. Following staining, the cells were washed twice with PBS and stained intracellularly with Foxp3-PE Staining Kit (clone PCH101; eBioscience, USA) according to manufacturer’s protocol. Acquisition was performed on BD Accuri C6 (BD Biosciences). FACS data were analyzed using FlowJo.
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3

Multiparameter Flow Cytometry for T Cell Analysis

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Staining with anti‐HLA‐A2‐PE (clone BB7.2, BD Biosciences), anti‐HLA‐A2‐FITC (clone BB7.2, BD Biosciences), anti‐CD4‐PErCP (clone SK3, BD Biosciences), anti‐CD4‐PE (clone #11830, R&D systems), anti‐CD25‐PE (clone 4E3, Miltenyi Biotec), and/or anti‐CD3‐PE‐Vio770 (clone BW264/56, Miltenyi Biotec) was performed in the dark with Ab diluted in FACS buffer (PBS with 0.5% HSA) for 15 min at 20°C or 30 min at 4°C. Cells were washed once with PBS, resuspended, and measured in FACS buffer. Where noted, following surface staining, viability staining was performed with Fixable Viability Dye eFluor 780 (eBioscience) according to the manufacturer's instruction (without subsequent fixation). Live cells were gated via fsc/ssc and, where applicable, on viability dye‐negative cells. Backgating of viability dye positive and negative populations confirmed that dead cells could be completely gated out by fsc/ssc with the purified CD4 T cells used. Acquisition was performed on a CyAn ADP 9 Color Analyzer (Beckman Coulter) or BD FACSVerse (BD Biosciences), and automatic parameter compensation was performed automatically with the CyAn software (Summit) tool or with FlowJo utilizing single stained control samples. Flow cytometry data were analyzed using FlowJo software (Tree Star) version 10.4.1.
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4

Treg Depletion Assessment by Flow Cytometry

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Treg depletion was assessed as previously described [11 (link), 13 (link), 16 (link)]. In brief, blood samples were obtained at baseline, 4 and 8 weeks after the first KW-0761 treatment, and every 4 weeks during the continuous treatment until the point of study discontinuation. PBMCs were isolated from heparinized blood by density gradient centrifugation using Ficoll-Paque Plus (GE Healthcare, Fairfield, CT). Cells were stored in liquid N2 until used. Treg depletion was evaluated by flow cytometry. After thawing, PBMCs were incubated with mAb at 4°C for 20 minutes. Cells were stained with anti-CD4-PerCP (clone SK3; BD Biosciences, San Jose, CA), anti-CD25-APC (clone 2A3; BD Biosciences), and anti-CD45RA-FITC (clone ALB11; Beckman Coulter, Brea, CA) mAbs. The intracellular staining of FoxP3 was performed with anti-FoxP3-PE (clone PCH101; eBioscience) mAb and a FoxP3/Transcription Factor Staining Buffer Set (eBioscience, San Diego, CA) according to the manufacturer’s instructions. After the incubation, cells were washed and analyzed by FACS Calibur (BD Biosciences). CD45RA+ FoxP3lo resting/naïve Tregs, CD45RA-FoxP3hi activated/effector Tregs (eTregs), and CD45RA-FoxP3lo non-Tregs were analyzed as previously described [7 (link)].
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5

Flow Cytometric Analysis of Foxp3+ Regulatory T Cells

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Cells were washed with PBS and incubated with antibodies diluted in PBS/10% HS/0.01% NaN3 (sodium azide) for 30 min on ice. Surface antibodies were anti-CD4 PerCp (clone SK3), CD3 FITC (clone UCHT1), and CD25 PE (clone M-A251, all BD Biosciences). Intracellular staining with anti-Foxp3 APC (clone PCH101, eBiosciences) was performed using the eBioscience fixation/permeabilization buffer kit. A minimum of 105 events in the lymphocyte gate was acquired using a FACScalibur flow cytometer for 4-color analysis and analyzed using WEASEL software (WEHI, Melbourne, VIC, Australia). Cells were gated first based on forward and side scatter to excluded dead cells and cell debris. T cells in the lymphocyte gate were identified based on CD3 expression, further sub-gated on CD4+ T cells (Figure 1A) and CD25+ cells then subdivided into Foxp3hi and Foxp3int cells (Figure 1B).
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6

T-Cell Activation and Characterization

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Esp3I enzyme (#FD0454), TurboFect Transfection Reagent, and Dynabead Human T-Activator CD3/CD28 (#11131D) were purchased from Thermo Fisher Scientific. RPMI-1640 medium, fetal bovine serum, and L-glutamine were purchased from Sigma-Aldrich. Lymphodex (#002041500) was obtained from Inno-train, the RNeasy Micro Kit (#74004) from Qiagen, PrimeScript RT Reagent Kit from Takara, SYBR Green Master Mix (#4367659) from Applied Biosystems Life Technologies, Inc., True-NuclearTM Buffer Set from BioLegend, Rat IgG2a antibody from BD Biosciences, and human IL-2 from Royan Institute. The anti-CD3-FITC (clone HIT3a, #555339), anti-CD4-PerCP (clone SK3, #566316), anti-CD8-PE (clone HIT8a, #555635), anti-CD45RA-PE (clone 5H9, #556627), anti-CD45RA-APC (clone 5H9, #561210), and anti-BLIMP1-PE (clone 6D3, #564702) antibodies from BD Biosciences, the anti-CD8-Pacific Blue (clone SK1, #344718) and anti-CD62L-FITC (clone DREG-56, #304812) antibodies from BioLegend, the anti-CD3-APC-Alexa Flouor 750 (clone UCHT1, #A66329), anti-CD4-Krome Orange (clone 13B8.2, #A96417) antibodies from Beckman Coulter, and the anti-CD107a-PE (clone eBioH4A3, #12-1079-42) antibody from eBioscience were used for the flow cytometry experiments.
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7

PBMC Isolation and Treg Quantification

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Blood samples were obtained at baseline, 4 and 8 weeks after the first KW-0761 treatment, and every 4 weeks during the continuous treatment until study-off. PBMCs were isolated from heparinized blood by density gradient centrifugation using Ficoll-Paque Plus (GE Healthcare, Fairfield, CT). Cells were stored in liquid N2 until used. Treg depletion was evaluated by flow cytometry. After thawing, PBMCs were incubated with mAbs at 4°C for 20 minutes. Cells were stained with anti-CD4-PerCP (clone SK3; BD Biosciences, San Jose, CA), anti-CD25-APC (clone 2A3; BD Biosciences), and anti-CD45RA-FITC (clone ALB11; Beckman Coulter, Brea, CA) mAbs. The intracellular staining of FOXP3 was performed with anti-FoxP3-PE (clone PCH101; eBioscience) mAb and a FoxP3/Transcription Factor Staining Buffer Set (eBioscience, San Diego, CA) according to the manufacturer’s instructions. After the incubation, cells were washed and analyzed by FACSCalibur (BD Biosciences). CD45RA+ FoxP3 lo resting/naïve Tregs, CD45RA FoxP3 hi activated/effector Tregs (eTregs), and CD45RA FoxP3 lo, non-Tregs were analyzed as previously described.15 (link)
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