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6 protocols using sp1 sirna

1

Cardiomyocyte Transfection and Hydrogen Sulfide Signaling

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Cultured neonatal rat cardiomyocytes were serum deprived for 2 hours and then transfected with rat KLF5‐specific siRNA (5′‐AACCCGGAUCUGGAGAAGCGA‐3′), nonspecific control siRNA (5′‐GCGCGCUUUGUAGGAUUCG‐3′), specificity protein 1 (SP‐1) siRNA or nonspecific control (Santa Cruz Biotechnology, Dallas, TX); wild‐type SP‐1 or SP‐1 mutated at Cys659, Cys664, Cys689, and Cys692 to Ala (Haibio, Shanghai, China); wild‐type CSE plasmid (provided by R.W.) using the Lipofectamine 2000 or Lipofectamine 3000 reagent (Invitrogen), according to the manufacturer's protocol. After 24 hours, the cells were pretreated with GYY4137 for 4 hours, followed by Ang II (100 nmol/L) for 24 hours.
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2

Luciferase Assay for MMP9 Promoter

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Luciferase assays were performed according to the manufacturer's instructions (Promega CAT.# E2510). The human MMP9 promoter Luc reporter which construced by human MMP9 promoter (−700,−100) and Luc reporter construct (PGL 4.20) (Addgene, Cambridge, MA) was developed by Dr Zhuang’ lab (SNB, NINDS, NIH). The Sp1 siRNA (Cat. # sc-90024, Santa Cruz) and PC4 siRNA (Cat.# sc-38583, Santa Cruz). Transfections were performed using Lipofectamine 2000 (Cat. #12566014, Invitrogen). Normalizing the DNA amount in each well with empty vector DNA, and the luciferase activity was normalized to light units per microgram protein. Experiments were performed in triplicate.
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3

Modulation of TGF-β1 signaling in human dermal fibroblasts

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Human primary dermal fibroblasts (HDFs) (American Type Culture Collection (ATCC); Manassas, VA, USA) were maintained in fibroblast basal medium (ATCC) supplemented with fibroblast growth kit low serum (ATCC)39 (link). Cells were incubated with recombinant human TGF-β1 (10 ng/mL; R&D Systems, Minneapolis, MN, USA) and a combination of the following: TLY01213 (link), anti-DR4 Ab (Mapatumumab; Creative Biolabs, Shirley, NY, USA), anti-DR5 Ab (Conatumumab; Creative Biolabs), Smad 2 inhibitor SB203580 (Selleckchem, Houston, TX, USA), Smad3 inhibitor SIS3 (Selleckchem), or MAPK inhibitor PD98059 (Selleckchem). For gene silencing studies, cells were transfected with DR4 siRNA (Santa Cruz Biotechnology, Inc., Santa Cruz, CA, USA), DR5 siRNA (Santa Cruz Biotechnology, Inc), Smad2/3 siRNA (Santa Cruz Biotechnology, Inc.), SP1 siRNA (Santa Cruz Biotechnology, Inc.) or Smad2/3 shRNA (Santa Cruz Biotechnology, Inc.) using Lipofectamine 2000 (Invitrogen, Carlsbad, CA, USA) according to the manufacturer’s protocol. Human dermal fibroblasts from patients were generated as previously described20 (link). Skin biopsies from three patients were digested using dispase II (Sigma-Aldrich, St. Louis, MO, USA) with 10% heat-inactivated FCS and cells were maintained in DMEM/F-12 medium. All cell lines were negative for mycoplasma.
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4

siRNA Transfection of HT-29 Cells

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Subconfluent HT‐29 cells were passaged and washed twice in antibiotic‐free media, followed by seeding at a density of 1.0 × 106 cells per well in a 12‐well plate. Immediately following seeding, 200 μL of premixed OptiMEM Media (Gibco) containing siRNA and 20 μL of Lipofectamine RNAiMAX reagent (Life Technologies) were added dropwise to each well, resulting in final siRNA concentrations of 100–300 nmol/L (Sp1 siRNA, Cat#sc‐29487; Sp3 siRNA, Cat# sc‐29490, Santa Cruz Biotechnology; AllStars Negative Control siRNA, Cat#1027281, Qiagen). Cells were transiently transfected in suspension and allowed to adhere to the base of the well overnight, followed by switch to FBS‐free media for 1 h and treatment with cytokine for 12 h in FBS‐free media. Cells were washed twice in PBS and collected for mRNA or protein analysis.
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5

Characterization of NRF1 and NSMCE2 Regulation

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Full-length wild type (WT) human NRF1 and O-GlcNAc amino acid sites mutant (human NRF1, Thr342/Thr500 → Ala) NRF1 were subcloned into pCMV-Puro64. NSMCE2 promoter report constructs were made by cloning 1046 bp of human NSMCE2 promoter into luciferase vector pGL3-basic. The primers used for this study are listed in Supplementary Data 16. SP1 siRNA (#sc-29487), KLF5 siRNA (#sc-37718), NRF1 shRNA (#sc-38105-SH) and NSMCE2 siRNA (#sc-77813) were purchased from Santa Cruz Biotechnology. Transfection of the 293T, MCF-7 and MCF-7/ADR cells was performed with Lipofectamine 2000 (Invitrogen) according to the manufacturer’s instructions. The stably transfected cells were then selected by the addition of puromycin (Sigma) to the medium.
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6

Sp1 Knockdown in Cell Culture

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Cells (1 × 105) were seeded on a 6-well plate and transfected with 15 nM of control or Sp1 siRNA (Santa Cruz Biotechnology, Inc., Danvers, MA, USA) for 48 h using INTERFERin transfection reagent (Polyplus-transfection Inc., New York, NY, USA) according to the manufacturer’s protocol.
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