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Sali hindiii

Manufactured by New England Biolabs

SalI/HindIII is a set of two restriction enzymes that are commonly used in molecular biology and genetic engineering experiments. SalI recognizes and cleaves the DNA sequence 'GTCGAC', while HindIII recognizes and cleaves the DNA sequence 'AAGCTT'. These enzymes can be used together to generate specific DNA fragments for various applications, such as cloning, genetic manipulation, and analysis.

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2 protocols using sali hindiii

1

Cloning and Characterization of Bacterial Genes

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The DNA regions containing yafW-ykfI, yfjZ-ypjF, five genes in CP4-6 (Supplementary Figure S1C) and five genes in CP4-57 (Supplementary Figure S1F) were amplified from BW25113 using primer pairs listed in Supplementary Table S3. The expected PCR products were digested with SalI/HindIII (New England Biolabs, NEB) and cloned into the corresponding sites of pCA24N, generating pCA24N-yafW-ykfI, pCA24N-yfjZ-ypjF, pCA24N-CP4-6-L5, and pCA24N-CP4-57-R5. The constructs were confirmed by PCR followed by DNA sequencing using primers pCA24N-F/-R. The other recombinant plasmids of pBAD, pHGE, pUT18C, and pHERD20T were constructed following similar steps. The detailed information of primer pairs used for PCR amplification, restriction enzyme sites used in digestion of the PCR products, and the primers used for PCR sequencing are shown in Supplementary Table S3. The recombinant plasmids pKT25-ftsZ, pKT25-mreB, pET28b-yafW, pET28b-yfjZ, and pET28b-cbeA were constructed with ClonExpressTM II One Step Cloning Kit (Vazyme Biotech, Piscataway, NJ, USA), and the correct constructs were confirmed by PCR using primer pairs pKT25-F/-R or T7-F/-R.
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2

Bacterial Plasmid Manipulation Protocol

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PCR polymerase (Agilent Technologies), plasmid isolation kit (Qiagen), DNA gel extraction kit (Qiagen), DNA ligation kit (Roche) which includes ligation enzyme (T4 DNA ligase) and ligation buffer, SalI/HindIII (NEB), CP (Calbiochem), IPTG (GBT), CCCP (≥ 97%, Sigma), carbenecillin (Sigma), AZT (Sigma), EtBr (Invitrogen), and E. coli DH5α (Invitrogen) were purchased and used as received. P. aeruginosa strains (WT, nalB1, ΔMexB, ΔABM) and plasmid (pMMB67EH) were provided by Hiroshi Yoneyama.40 (link)-41 (link) All other reagents except indicated were purchased from Sigma and used as received. The nanopure deionized (DI) water (18 MΩ water, Barnstead) was used to prepare all solutions, including the L-broth (LB) medium (1% tryptone, 0.5% yeast extract and 0.5% NaCl in DI water, pH = 7.2).
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