The largest database of trusted experimental protocols

3 protocols using oligo dt

1

RNA Extraction and Quantification Protocol

Check if the same lab product or an alternative is used in the 5 most similar protocols
Total RNA was extracted using the Direct-zol RNA MiniPrep Kit (Zymo Research Corporation, Irvine, CA, USA) according the manufacturer’s instructions. Briefly, 1 μg of total RNA was incubated with 0.5 μg of oligo dT (MD.Bio., Taipei, Taiwan) at 70 °C for 15 min. Then, the RNA was mixed with buffer containing 0.25 mM dNTPs (MD. Bio., Taipei, Taiwan), 20 U of RNasin I Plus RNase Inhibitor (Promega, WI, USA) and 20 U of M-MLV Reverse Transcriptase (Promega) and incubated at 42 °C for 90 min for cDNA synthesis. This mixture was then used for specific cDNA amplification in a GeneAmp PCR system 2400 (Perkin Elmer, Waltham, MA, USA).
For mRNA quantification, Real-time PCR was performed using a standard LightCycler 480 SYBR Green I Master protocol on an LightCycler 96 System Roche, Basel, Switzerland). The 10 μl PCR included 2 μl RT product, 5 μl 2 × SyberGreen PCR Mix, 0.5 μl 10 μM forward primer, 0.5 μl 10 μM reverse primer and 2 μl ddH2O. All reactions were run in triplicate. The cycle number at which the reaction crossed the threshold cycle (Ct) was determined for each gene and the relative amount of each gene to GAPDH was described using the equation 2ΔCt where ΔCt=(Ctinterested gene – CtGAPDH).
+ Open protocol
+ Expand
2

Recombinant Visfatin Biofunctionality Assay

Check if the same lab product or an alternative is used in the 5 most similar protocols
Recombinant human visfatin was purchased from PeproTech, Inc. (Rocky Hill, NJ, USA). VEGF-C (sc-9047) and IgG (sc-69786) monoclonal antibodies were purchased from Santa Cruz Biotechnology (Santa Cruz, CA, USA). The cell culture mediums Dulbecco’s Modified Eagle Medium (DMEM) and Roswell Park Memorial Institute (RPMI) 1640 were purchased from Gibco Life Technologies Corporation (Grand Island, NY, USA). Chloroform and isopropanol were purchased from J.T. Baker (NJ, USA). Oligo-dT was obtained from MDBio Inc. (Gaithersburg, Maryland, USA). Dithiothreitol (DTT), dNTP, MMLV and 5X first-strand buffer were purchased from Invitrogen Corporation (Carlsbad, California, USA). Taqman® One-Step PCR Master Mix, qPCR primers and probes were bought from Applied Biosystems (Foster City, CA, USA). A BCA protein assay kit was obtained from Pierce (Meridian Rd. Rockford, IL 61101 USA). Tri’s buffer, 30% acrylamide and sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) were purchased from Amresco Inc (6681 Cochran Rd, Solon, Ohio, USA). The detailed source of inhibitors and siRNAs are listed in Supplementary Tables 1 and 2. All other chemical reagents not already mentioned were obtained from Sigma-Aldrich (St. Louis, MO, USA).
+ Open protocol
+ Expand
3

Total RNA Extraction and cDNA Synthesis

Check if the same lab product or an alternative is used in the 5 most similar protocols
Total RNA was extracted using the Direct-zol RNA MiniPrep Kit (Zymo Research Corporation, Irvine, CA, USA) according to the manufacturer's instructions. Briefly, 1 μg of total RNA was incubated with 0.5 μg of oligo dT (MD Bio., Taipei, Taiwan) at 70 °C for 15 min. Then, the RNA was mixed with buffer containing 0.25 mM dNTPs (MD Bio.), 20 U of RNasin I Plus RNase Inhibitor (Promega, San Luis Obispo, CA, USA) and 20 U of M-MLV Reverse Transcriptase (Promega) and incubated at 42 °C for 90 min to allow for cDNA synthesis. This mixture was then used for specific cDNA amplification in a GeneAmp PCR system 2400 (Perkin Elmer, Waltham, MA, USA).
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!