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13 protocols using anti cd4 fitc

1

Quantification of Serum Biomarkers and Immune Cell Phenotypes

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Blood was centrifuged and serum was stored in -80 °C until assayed. Levels of biomarkers were quantified by using commercially available kits of enzyme immunosorbent assays from Bio-Techne (R&D Systems, Minneapolis, MN) according to the manufacturer’s instructions. The lower limits of detection were: 16 pg/ml for tumor necrosis factor-alpha (TNFα); 40 pg/ml for IL-6; 31 pg/ml for IL-10; 62 pg/ml for IL-38; 156 pg/ml for IFNγ; and 313 p/ml for platelet-derived growth factor (PDGF)-A.
White blood cells were incubated for 15 minutes in the dark with the monoclonal antibodies anti-CD14 FITC, anti-HLA-DR-PE, anti-CD45 PC5 (Beckman Coulter, Marseille, France). White blood cells were also incubated for 15 minutes in the dark with anti-CD3 FITC, anti-CD4 FITC and anti-CD19 FITC (fluorescein isothiocyanate, emission 525nm, Beckman Coulter); with anti-CD4 PE, anti-CD8 PE, and anti-CD(16+56) PE (phycoerythrin, emission 575nm, Beckman Coulter); and with anti-CD45 PC5 (emission 667nm, Beckman Coulter). Fluorospheres (Beckman Coulter) were used for the determination of absolute counts. Cells were analyzed after running through the CYTOMICS FC500 flow cytometer (Beckman Coulter Co, Miami, Florida). Isotypic IgG controls stained also with anti-CD45 were used for each patient. Results of HLA-DR on CD14/CD45-cells were expressed as mean fluorescence intensity (MFI).
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2

Flow Cytometry Analysis of Cell Markers

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Flow cytometry was performed as previously described [26 (link),27 (link)]. Analysis of the expression levels of cell-surface markers was performed by flow cytometry. DCs were blocked for 5 min with PBS containing 10% heat inactivated human AB serum (Sigma-Aldrich, St. Louis, MO, USA), and then stained by adding the antibodies to the same buffer. All other cell types were stained on PBS containing 3% FBS. Cells were labeled with anti-CD1a-PE, anti-CD3-PC7, anti-CD4-FITC, anti-CD14-PC7, anti-CD19-ECD, anti-CD25-PC7, anti-CD69-PC5, anti-CD80-FITC, anti-CD86-PC5.5, anti-CD86-PE, anti-HLA-DR-ECD, anti-HLA-DR-PB, anti-HLA-DR-PE (all from Beckman Coulter Inc., Brea, CA, USA), anti-CD8-Pacific Blue, anti-CD71-APC-Cy7, anti-CD197-APC-Cy7 (CCR7) (all from BioLegend, San Diego, CA, USA), anti-CD83-APC (BD Biosciences, Franklin Lake, NJ, USA), and anti-CD3-PO (Abcore, Ramona, CA, USA).
Levels of surface expression on cells were estimated by flow cytometry (Gallios; Beckman Coulter, Brea, CA, USA) and analyzed using Kaluza software (Beckman Coulter, Brea, CA, USA). Entry of FITC-labeled p24 peptide into the DCs was also estimated by flow cytometry. DCs were collected 2 h, 24 h, and 48 h after complex addition, washed with PBS, and acid washed, in order to eliminate any peptide attached to the cell surface. Fluorescence was measured by flow cytometry.
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3

Isolation of Naive CD4+ T Cells

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Blood from healthy donors was obtained from the Swiss Blood Donation Center of Basel and Lugano, and used in compliance with the Federal Office of Public Health (authorization no. A000197/2 to F.S).Peripheral blood mononuclear cells (PBMCs) were isolated by Ficoll gradient centrifugation. CD4+ T cells were enriched with magnetic microbeads (Miltenyi Biotec). Naive CD4+ T cells were sorted as CD4+CD8CCR7+CD45RA+CD25on a FACS Aria III cell sorter (BD Biosciences). For cell staining, the following antibodies were used: anti-CD4-APC (allophycocyanin), clone 13B8.2; anti-CD4-FITC (fluorescein isothiocyanate), clone 13B8.2; anti-CD8-APC, clone B9.11; anti-CD8-FITC, clone B9.11; anti-CD45RA-PE (phycoerythrin), clone alb11; anti-CD25-FITC, clone B1.49.9 (all from Beckman Coulter); anti-CCR7-Brilliant Violet 421, clone G043H7 (BioLegend).
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4

Isolation of Naive CD4+ T Cells

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Blood from healthy donors was obtained from the Swiss Blood Donation Center of Basel and Lugano, and used in compliance with the Federal Office of Public Health (authorization no. A000197/2 to F.S).Peripheral blood mononuclear cells (PBMCs) were isolated by Ficoll gradient centrifugation. CD4+ T cells were enriched with magnetic microbeads (Miltenyi Biotec). Naive CD4+ T cells were sorted as CD4+CD8CCR7+CD45RA+CD25on a FACS Aria III cell sorter (BD Biosciences). For cell staining, the following antibodies were used: anti-CD4-APC (allophycocyanin), clone 13B8.2; anti-CD4-FITC (fluorescein isothiocyanate), clone 13B8.2; anti-CD8-APC, clone B9.11; anti-CD8-FITC, clone B9.11; anti-CD45RA-PE (phycoerythrin), clone alb11; anti-CD25-FITC, clone B1.49.9 (all from Beckman Coulter); anti-CCR7-Brilliant Violet 421, clone G043H7 (BioLegend).
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5

Profiling T Cell and Monocyte Immune Markers in T1D

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To assess the expression of mOX40 in CD3+, CD4+, or CD8+ T cells and mOX40L in CD14+ monocyte and CD19+ B cells, peripheral blood mononuclear cell (PBMC) was isolated from T1D patients or healthy donors. Flow cytometry was performed on PBMC incubated with fluorochrome-labeled monoclonal antibodies (mAbs) for 30 min. Anti-CD3-FITC (clone: UCHT1), anti-CD4-FITC (clone: RPA-T4), anti-CD8-FITC (clone: SFCI21), anti-CD14-FITC (clone: RMO52), and anti-CD19-FITC (clone: J3-119) mAbs were from Beckman Coulter. Anti-OX40-PE (clone: ACT35) and anti-OX40L-PE (clone: RM134L) were from eBioscience. Cells were washed and then immediately measured by flow cytometry (Beckman Coulter, CA). Data were analyzed using FlowJo software (Tree Star, OR).
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6

Phenotypic Analysis of Dendritic Cells and Macrophages

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Analysis of cell-surface phenotype of DCs and MØs was performed by flow cytometry. Cells were labeled with anti-CD4-FITC, anti-CD69-PC5, anti-CD80-FITC, anti-CD1a-PE, anti-HLA-DR-ECD, anti-CD14-PC7, anti-CD86-PC5.5 (all from Beckman Coulter Inc., Brea, CA, USA), anti-CD8-Pacific Blue, anti-CD36-APC, anti-CD197-APC-Cy7 (CCR7) (all from BioLegend, San Diego, CA, USA), anti-CCR5-PE, anti-CD209-PE, anti-CD83-APC (all from BD Biosciences, Franklin Lake, NJ, USA), anti-CXCR4-APC (RandD systems, Minneapolis, MN, USA) and anti-CD163-FITC (MBL International Corp., Woburn, WA, USA). Levels of surface expression on cells were estimated by flow cytometry (Gallios; Beckman) and analyzed using Kaluza software (Beckman).
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7

Profiling Immune Cell Subsets in Cancer

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Frequency of T cell subsets, macrophage subsets, and myeloid-derived suppressor cells (MDSC) in the peripheral blood was analyzed via flow cytometry. PBMCs procured from pre-therapy and cycle 4 day 1 blood draws were stained with anti-CD3-V450, anti-CD8-PE, anti-CD4-FITC, anti-Foxp3-PE, anti-CD56-APC, anti-CD16-APC Cy7, anti-NKG2C, anti-CD33-APC, anti-HLA-DR-PECy7, anti-CD11b-PE, anti-CD14-V450, anti-CD15-FITC, anti-CD80-FITC, anti-CD1630-PE, anti-CD206-APC and/or anti-CD69-PE-Texas Red (Beckman Coulter, Brea, CA). Immune cell subsets were defined as follows: CD4 T cells CD3+/CD4+, CD8 T cells CD3+/CD8+, Treg CD3+/CD4+/Foxp3+, M1 macrophages CD14+/CD80+/CD163/CD206+, M2 macrophages CD14+/CD80/CD163+/CD206+, NK cells CD3/CD56+/CD16+, granulocytic MDSC CD33+/HLA-DR/CD11b+/CD15+, monocytic MDSC CD33+/HLA-DR/CD11b+/CD14+. Data was acquired using a LSRII flow cytometer (BD Biosciences, San Jose, CA).
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8

Multicolor Flow Cytometry Panel

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Cells were incubated with the indicated flourochrome-labeled antibodies for 20 minutes in the dark at room temperature and analyzed immediately using a Coulter Epics ALTRA flow cytometer (Fullerton, CA). Live cells were gated on the basis of side and forward scatter and at least 10,000 events were recorded for each sample. The following antibodies were obtained from Immunotech Beckman Coulter (Marseille, France): anti-CD127-phycoerythrin (PE) (R34.34), anti-CD3-fluorescein isothiocyanate (FITC) (UCHT1), anti-CD4-FITC (13B.2), anti-CD8-phycoerythrin-Cy5 (PC5) (B9.11), anti-CD14-FITC (RM052), anti-CD25-PC5 (B1.49.9), anti-CD28-PC5 (CD28.2), anti-CD45RA-FITC (ALB11), anti-CD45RO-FITC (UCHL1), anti-CD56-PC5 (N901NHK-1), and anti-CD62L-FITC (DREG56). Anti-CD132-PE (555900) was obtained from BD Biosciences (Mississauga, Ontario, Canada). All antibodies were used at saturating concentrations and the corresponding isotype controls were included.
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9

Flow Cytometry Analysis of PD-1 Expression

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Flow cytometry was performed using 50 μL of EDTA-treated peripheral blood incubated for 30 min at 4°C with fluorochrome-labeled monoclonal antibodies (mAbs): anti-CD4-FITC (Beckman), anti-CD8-FITC (Beckman), anti-CD56-FITC (Beckman), and anti-PD-1-PE (BioLegend). Erythrocyte lysis and cell fixation were carried out using OptiLyse C Lysing Solution (Beckman). Treated blood samples passed through the Coulter Epics XL Flow cytometer (Beckman), and the relevant data were acquired and accordingly examined. Data analysis was accomplished by FlowJo software (Tree Star, Ashland).
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10

Multiparametric Flow Cytometry Analysis of T Cell Subsets in Rheumatoid Arthritis

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To analyze the percentage of CD4+CD25+ T cells, CD4+CD25+CD45RA+ naïve Treg cells, CD4+CD25+CD45RA-CD127low Treg cells, and CD3+CD4+HLADR+ T cells in the peripheral blood drawn from RA patients, the following fluorophore-conjugated antibodies were used: anti-CD3-ECD (A07748), anti-CD4-FITC (A07750), anti-CD25-PC5 (IM2646), CD127-PE (IM1980U; all from Beckman Coulter, Inc., Brea, CA, USA), anti-human HLA-DR (HPDR-025, 4A BIOTECH, Beijing, China), and anti-human CD45RA (FNH0453-025, 4A BIOTECH, Beijing). The samples were incubated with antibodies (Table S1) at 4 °C in darkness for 15 min and then lysed with RBC lysing buffer. After two washes in PBS buffer, the cells were analyzed using a Beckman Coulter FC500 Cytometer. To ensure the rigor and authenticity of the data, the flow cytometric analysis for each sample was repeated twice. All data analyses were performed using CXP analysis software.
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