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7 protocols using anti γ h2ax primary antibody

1

Immunofluorescence Imaging of γH2AX

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Cells were prepared for imaging by attachment to coverslips coated with 0.01% Poly-L-Lysine and fixed for 15 min with 4% PFA. Cells were incubated with anti-γH2AX primary antibody (Cell Signaling Technology 9178) for 1 h at room temperature. Cells were then washed with PBS and incubated with secondary antibody for 30 min at room temperature. Cells were washed with PBS and mounted onto slides using Vectashield with DAPI. Images were acquired at room temperature using a Zeiss AXIO Observer.Z1 inverted microscope equipped with a Zeiss LSM‐880 confocal system using a Plan-Apochromat 63x/1.4 Oil DIC M27 objective. Images were then processed using OMERO (v5.4.9).
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2

Immunostaining of DNA Damage Markers

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HCT116, HT29, and SW480 cells were seeded into treated tissue culture glass slides (BD Falcon, 354114) and separated into five treatment groups. After treatment on days 1, 4, and 7, the cells were rinsed three times with PBS and fixed with 3.7% paraformaldehyde at 4 °C for 15 min. Then, the fixed cells were permeabilized with 0.3% Triton X-100 in PBS for 10 min at room temperature. After rinsing with PBS, the cells were blocked with blocking buffer (PBS containing 3% bovine serum albumin and 0.1% Triton X-100) for 1 h at room temperature and incubated separately with the anti-53BP1 (1:100) (Cell Signaling Technology, #4937) and anti-γ-H2AX primary antibody (1:200) (Cell Signaling Technology, #9718) at 4 °C overnight. The cells were rinsed three times with PBS, and then incubated with Alexa Fluor 488-conjugated secondary antibodies (1:500) (Invitrogen, Carlsbad, CA, USA) in the dark for 1 h at room temperature. Nuclei were counterstained with DAPI (1:1000 in PBS) (Biotium, Fremont, CA, USA). Images were acquired using an IX71 fluorescence microscope (Olympus) with a 100× oil immersion objective lens and standard FITC filter. Data were collected with CellSens software.
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3

Immunofluorescence analysis of mitochondrial apoptosis

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Cells grown on coverslips were fixed in 4% paraformaldehyde, permeabilized with 1% Triton-100, and blocked with 10% normal goat serum. They were incubated with mitotracker (Beyotime Biotechnology, Shanghai, China), anti-PGAM5 (Abcam, Cambridge, UK), anti-BclxL (Abcam, Cambridge, UK), anti-BAX (Abcam, Cambridge, UK), anti-Cyt.C (Abcam, Cambridge, UK) and anti-γ-H2AX primary antibody (Cell Signaling, Danvers, MA, USA), for 1 h at 37 °C in a humid chamber, and then incubated with secondary antibodies for 1 h. Immunofluorescence images were captured using FV10-ASW viewer software (Olympus, Tokyo, Japan).
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4

Quantifying DNA Damage Response

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A total of 5 × 104 cells were seeded into a confocal laser dish 1 day before irradiation with 8 Gy. Four hours post irradiation, cells were fixed with 4% paraformaldehyde at room temperature for 30 min and permeabilized with 0.1% Triton X-100 for 2 h. Cells were then blocked with 5% BSA for 90 min and washed with PBS. After incubation with the anti-γ-H2AX primary antibody (1:400; Cell Signaling Technology) overnight at 4 °C, cells were washed with PBS and incubated with an Alexa Fluor 555-conjugated secondary antibody (Beyotime) for 90 min. Cells were washed with PBS, treated with DAPI staining solution for 20 min and observed using a confocal fluorescence microscope (Leica).
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5

Immunohistochemical Analysis of Embryos and Reproductive Tissues

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Embryos: Following fixation, embryos were analysed by immunohistochemistry for DNA damage repair (anti-γH2AX primary antibody; Cell Signaling Technology, Danvers, MA, USA) and O-GlcNAc (pan O-GlcNAc RL2 antibody; Abcam, Melbourne, VIC, Australia) in three experimental replicates, with at least 15 embryos per replicate using published methods15 (link). Ovary, oviduct and uterus: 7 µm paraffin embedded tissue sections were analysed for glycosylation and stress deflection (RL2 and HSP90a: Abcam, Melbourne, VIC, Australia, Pan O-GlcNAc CTD110.6: (Sigma), GRP94 and HSPA5: Novusbio, Littleton, CO, USA) in six mice/treatment/time point (20 sections/mouse) using standard methods62 (link). Fluorescence was detected using a Fluoview FV10i Confocal Laser-Scanning Microscope (Olympus) and instrument settings were constant for each replicate. Images obtained were processed and analyzed using Fiji software (National Institutes of Health), with pre-developed plugins and macros. For embryos, regions of interest were whole cells and nuclei only, and cytoplasmic staining was the difference between these values; the blastocoel cavity was excluded from blastocyst analysis. For reproductive tract tissues, regions of interest were the oviductal epithelium and uterine epithelium (details; figure legends).
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6

Evaluating DNA Damage Response to UiO-66-NH2(Hf)

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KYSE 150 cells
were cultured in glass-bottom dishes for 24 h, treated
with UiO-66-NH2(Hf) (1.0 mL, 0 or 50 μg/mL) for 4
h, and exposed to X-ray irradiation (0 or 6 Gy). After 3 h, the cells
were fixed in 4% paraformaldehyde for 1 h, permeabilized with Triton
X-100 (0.5 vol %) for 5 min, incubated in normal goat serum (5 vol
%) for 1 h, and then incubated with an anti-γH2AX primary antibody
(1:400, Cell Signaling Technology, Cat# 9718) at 4 °C overnight.
The cells were washed three times with phosphate-buffered saline (PBS)
and incubated with a DyLight 594-labeled secondary antibody (1:500,
Invitrogen, Cat# 35560) for 1 h at room temperature. Finally, the
cell nuclei were counterstained with Hoechst 33342 (20 μM).
Laser scanning confocal fluorescence images were acquired. Cells treated
with neither UiO-66-NH2(Hf) nor X-ray irradiation were
used as controls.
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7

Quantifying DNA Damage in Irradiated Cells

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A total of 5×10 4 cells were seeded into a confocal laser dish one day before irradiation with 8 Gy. Four hours post irradiation, cells were fixed with 4% paraformaldehyde at room temperature for 30 minutes and permeabilized with 0.1% Triton X-100 for 2 hours. Cells were then blocked with 5% BSA for 90 minutes and washed with PBS. After incubation with the anti-γ-H2AX primary antibody (1:400; Cell Signaling Technology) overnight at 4 , cells were washed with PBS and incubated with an Alexa Fluor 555-conjugated secondary antibody (Beyotime) for 90 minutes. Cells were washed with PBS, treated with DAPI staining solution for 20 minutes and observed using a confocal fluorescence microscope (Leica).
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