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4 protocols using ab78393

1

Lung Cancer Tissue Expression Profiling

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Primary tumor samples were collected from 138 patients at The Second Affiliated Hospital of Xi'an Jiaotong University who underwent surgery for lung cancer between 2011 and 2014. This study protocol was approved by the Ethics Committee of The Second Affiliated Hospital of Xi'an Jiaotong University and written informed consent was provided prior to patient enrollment. Lung cancer and adjacent normal tissues were immediately flash frozen in liquid nitrogen following collection and used for quantitative real-time PCR analysis, otherwise formalin-fixed paraffin-embedded lung cancer specimens underwent immunohistochemistry (IHC) analysis using SMURF2 rabbit polyclonal antibody (Abcam; ab272897), TRIM27 rabbit polyclonal antibody (Abcam; ab78393), or SIX3 rabbit polyclonal antibody (Bioss Biotechnology Company, Beijing, China; bs-11970R). Immunoreactivity was scored by two investigators based on the percentage of positively stained cells and staining intensity, which ranged from 0 to 3. Our cohort of 138 patients with lung cancer was parsed into two subgroups by IHC staining comprised of a low-expression group with an IHC score less than 50% and a high-expression group with an IHC score over 50%.
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2

Protein Expression Analysis via Western Blot

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Protein concentration in each tube was evaluated via the bicinchoninic acid (BCA) method. Protein samples (30 μg) were separated using sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) and then blotted onto polyvinylidene difluoride (PVDF) membrane (Millipore, Billerica, MA, USA). Blocking was applied through mixing the membrane with 5% skimmed milk. Membrane was labeled with primary antibodies (Abcam, Cambridge, MA, USA), including anti-E-Cadherin (ab40772), anti-vimentin (ab92547), anti-N-Cadherin (ab245117), amti-TRIM27 (ab78393) and anti-GAPDH (ab8245). Subsequently, horseradish peroxidase (HRP)-labeled secondary antibody (Abcam) was mixed with the membrane for 2 h. Protein bands were appeared and quantified with the enhanced chemiluminescence chromogenic substrate (Beyotime, Shanghai, China) and ImageJ software (Bio-Rad), respectively.
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Protein Expression Analysis in Cells

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Protein lysates were prepared using RIPA lysis buffer containing protease inhibitor cocktail (Sigma, St. Louis, MO, USA). After being separated by SDS‐PAGE, proteins were transferred onto nitrocellulose membranes (Millipore, Bedford, USA), blocked with 5% skim milk, and incubated with primary antibodies against METTL14 (Abcam; ab220030; 1:500), TRIM27 (Abcam; ab78393; 1:1000), STAT3 (Abcam; ab68153; 1:1000), p‐STAT3 (Abcam; ab267373; 1:1000), IGF2BP2 (Abcam; ab129071; 1:1000), and β‐actin (Cell Signalling Technology; 4970 s; 1:1000), followed by incubation with HRP‐conjugated secondary antibodies (Beyotime, Shanghai, China; A0208, A0216; 1:1000). Signals were detected using enhanced chemiluminescence system (Bio‐Rad, Richmond, CA, USA).
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4

Investigating SIX3 Protein Regulation via Co-Immunoprecipitation

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The details of these procedures were described previously [37 (link)]. Anti-SIX3 (Santa Cruz Biotechnology, Dallas, TX, USA; sc-81985), anti-FLAG (Abcam, Cambridge, MA, USA; ab205606), anti-HA (Abcam; ab9110), and anti-IgG (Santa Cruz Biotechnology; sc-2027) antibodies were used for co-immunoprecipitation (Co-IP). Immunoprecipitates were washed at least five times and subjected to western blot analysis using anti-TRIM27 (Abcam; ab78393), anti-NEDD4 (Abcam; ab236512), anti-SMURF2 (Abcam; ab94483), anti-RNF6 (Abcam; ab204506), anti-SYVN1 (Abcam; ab170901), anti-MDM2 (Abcam; ab16895), and Anti-SIX3 (Abcam; ab172131) antibodies. For ubiquitination assays, the lysates of A549 cells transfected with siTRIM27-1 or siNC were used for IP with an anti-IgG (Santa Cruz Biotechnology; sc-2027) or Anti-SIX3 antibody (Santa Cruz Biotechnology; sc-81985) and Protein A/G PLUS-Agarose (Novex, Oslo, Norway), which was performed at 4° C overnight. The eluted proteins were then detected by western blot analysis using an anti-ubiquitin (Ub) antibody (Abcam, ab7780).
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