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19 protocols using u0126 etoh

1

Quantitative Real-Time PCR Analysis of Gene Expression

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Total RNA was isolated from cell samples using the RNeasy Plus Mini Kit (Qiagen) according to the manufacturer’s protocol, followed by treatment with the RNA Clean & Concentrator Kit (Zymo). Reverse transcription of 2 μg of total RNA was carried out using the High-Capacity cDNA Reverse Transcription Kit (Applied Biosystems) according to the protocol of the manufacturer. Primers used in the real-time PCR are listed in Supplementary Table 1. The gene β-actin was used as an endogenous control for the normalization of expression levels. Real-time PCR reactions were performed on a ViiA™ 7 System using PowerUp™ SYBR™ Green Master Mix (Applied Biosystems). The amplification reactions were performed as follows: 15 min at 50 °C, 10 min at 95 °C, and 40 cycles of 95 °C for 15 s and 60 °C for 1 min. Fold change in gene expression was quantified by means of the comparative Ct method, which is based on the comparison of the target gene expression (normalized to the endogenous control β-actin) between the samples. For experiments designed to inhibit MEK1/2-ERK1/2 signaling, 100 μM MEK1/2-ERK1/2 inhibitor, U0126-EtOH (Selleckchem, S1102), was added to culture media along with tau protein.
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2

Inhibition of MAPK pathways in Vibrio alginolyticus-induced apoptosis

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U0126-EtOH, SB203580 and SP600125, which inhibit pathways involving ERK, p38 and JNK MAPK, respectively, were purchased from Selleck. Next-generation caspase inhibitors (Q-IETD-OPh and Q-LEHD-OPh) and a control inhibitor Q-VE-OPh were purchased from BioVision. These reagents were prepared as stock solutions by dissolving in dimethyl sulfoxide (DMSO). All inhibitors were added to cell monolayers grown in 24-well plates for 1 h before infection with V. alginolyticus. To rule out effect of DMSO on apoptosis, the same volume of DMSO was respectively added to the uninfected and ZJO-infected cells as negative and positive controls. The final concentration of each inhibitor used here showed no cytotoxicity to FHM cells, as tested by MTT cell viability assay. To evaluate the effect of inhibitors after 2 h of infection, cultures were subjected to TUNNEL and caspase activity assays as described above.
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3

Asclepiasterol Characterization and Validation

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Asclepiasterol was dissolved in dimethylsulfoxide (DMSO, Sigma Aldrich St. Louis MO) to make a 10 mmol/L stock solution and stored at −20°C. The purity of this compound was analyzed by high performance liquid chromatography and was found to be higher than 99%. The chemical structure was characterized by LC-MS and NMR.
Verapamil (VRP), paclitaxel, MTT, and rhodamine 123 (Rh123) were purchased from Sigma-Aldrich (Deisenhofer, Germany). Doxorubicin (Dox) and epirubicin (EPI) were obtained from Zhe-Jiang HISUN Pharmaceuticals Co (Zhejiang, China). Daunorubicin was supplied by National Institute for the Food and Drug Control (Beijing, China). Antibodies against P-gp/ABCB1, total AKT, total ERK, P-AKT(Thr 308/Ser473) and P-ERK(Tyr204) were products of Cell Signaling Technology. Alexa Fluor 488 goat anti-rabbit IgG (H+L) was purchased from Life Technologies. U0126-EtOH(2,3-bis(amino(2-aminophenylthio)methylene)succinonitrile,ethanol) was obtained from Selleckchem (Houston, TX) and dissolved in DMSO to make a 10μmol/L stock solution and stored at −20°.
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4

NT2D1 Embryonal Carcinoma Cell Culture

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NT2D1 embryonal carcinoma cells (American Type Culture Collection (ATCC) were used in this study and cultured as reported in [4 (link),5 (link),8 (link)]. Cells, cultured in DMEM (Sigma Aldrich, cat. D6546, St. Louis, MO, USA) complemented with 10% foetal bovine serum (FBS Gibco, cat. 10270, Gland Island, NY, USA), were treated, when indicated, with 40 ng/mL of HGF (human recombinant HGF, R&D Systems, cat. 294-HG, Minneapolis, MN, USA), 5 µM of MAPK-MEK1/2 selective inhibitor U0126 (U0126-Et-OH, Selleckchem, cat. S1102, USA and Canada only) or both molecules. The U0126 toxicity was evaluated by cell viability FACS analysis, using propidium iodide. We tested different concentrations (2.5, 5, 10, 15 µM) as suggested in the literature. To obtain an increase in G1 phase cell percentage, cells were cultured for 15 h without serum (starvation). Cells were incubated at 37 °C in a humidified atmosphere with 5% CO2.
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5

Lung Cancer Cell Line Modulation

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The human lung squamous cell carcinoma cell line H520 and the human lung adenocarcinoma cell lines H157, A549, H1299 and Anip973 were cultured in RPMI1640 (Gibco, Shanghai, China) supplemented with 10% fetal bovine serum (Gibco) and incubated with 5% CO2 at 37 °C. Actinomycin D (Sigma-Aldrich, St. Louis, MO, US) was used to block cyclin D1 transcription at a dose of 5 μg/mL. The mitogen-activated protein kinase kinase 1/2 (MEK1/2) inhibitor U0126-EtOH (Selleck Chemicals, Houston, TX, US) was used at a dose of 0.5 μmol/L. Epidermal growth factor (EGF) (PeproTech, Rocky Hill, NJ, US) was used at a dose of 50 ng/mL to stimulate the EGF receptor/mitogen-activated protein kinase (EGFR/MAPK) pathway.
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6

Neuroprotective Signaling Pathways in MPTP-Induced Toxicity

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MPTP (1‐Methyl‐4‐phenyl‐1,2,3,6‐tetrahydropyridine) and MPP+ (1‐methyl‐4‐phenylpyridine) were purchased from Sigma‐Aldrich (Cat#M0896; D048). Human PDGF‐BB was obtained from Genscript (Cat#Z02892). STI‐571 [4‐[(4‐methylpiperazin‐1‐yl) methyl]‐N‐ [4‐methyl‐3‐ [(4‐pyridin‐3‐ylpyrimidin‐2‐yl) amino] phenyl] benzamide], LY294002 [2‐(4‐morpholinyl) ‐8‐phenyl‐1(4H)‐benzopyran‐4‐one], and U0126‐EtOH [1,4‐diamino‐2, 3‐dicyano‐1, 4‐bis (o‐aminophenylmercapto) butadiene] were purchased from Selleckchem (Cat#152459‐95‐5; 154447‐36‐6, and 1173097‐76‐1). Primary antibodies for phospho‐Akt (Cat#p2717), Akt (Cat#9272s), phospho‐ERK (Cat#4374s), ERK (Cat#9107s), phospho‐CREB (Cat#9198s), and CREB (Cat#9197s) were from Cell signaling technology (CST). Anti‐tyrosine hydroxylase (Cat#25859‐1‐AP) and anti‐β‐actin (Cat#60008) primary antibodies were from Proteintech Group. Anti‐mouse IgG (Cat#7076P2) and anti‐rabbit IgG (Cat#7074P2) secondary antibodies were from CST. Anti‐mouse NeuN (Cat#ab104224) were purchased from Abcam. Alexa Fluor 568‐conjugated goat anti‐rabbit secondary antibody (Cat#A11005) and Alexa Fluor 488‐conjugated goat anti‐mouse secondary antibody (Cat#A11001) were from Thermo Fisher Scientific.
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7

Investigating CCS Inhibition and Signaling

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DC_AC50, a CCS inhibitor, was provided by the Shanghai Institute of Materia Medica of the Chinese Academy of Sciences. U0126-EtOH (catalog number: S1102) was purchased from Selleck. Antibody against phospho-p44/42 MAPK (Erk1/2) (Thr202/Tyr204) (1:1000 times dilution) (catalog number: 4370S), p44/42 MAPK (Erk1/2) (1:1000 times dilution) (catalog number: 4695S), phpspho-MEK1/2 (Ser217/221) (1:1000 times dilution) (catalog number: 9154S), MEK1/2 (1:1000 times dilution) (catalog number: 8727S), β-actin (1:1000 times dilution) (catalog number: 8457S), mouse IgG (1:3000 times dilution) (catalog number: 7076S), and rabbit IgG (1:3000 times dilution) (catalog number: 7074S) were from cell signaling technology. Anti-Superoxide Dismutase 4 (1:500 times dilution) (catalog number: ab167170) was from Abcam. Anti-Flag tag (1:1000 times dilution) (catalog number: 66008) was from proteintech. CCS shRNA was purchased from Open Biosystems, Huntsville, AL. The sequence of targeted CCS shRNA was as follows: 5′-CCGGCTGATTATTGATGAGGGAGAACTCGAGTTCTCCCTCATCAATA ATCAGTTTTTG-3′. Lipofectamine RNA iMAX was purchased from Invitrogen. The sequences of targeted CCS siRNA were as follows: sense: 5′-GUCUUGGUACACACCACUCUA-3′; Antisense: 5′-UAGAGUGGUGUGUACCAAGAC-3′.
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8

Kinase Inhibitor Library Protocol

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The Library of Pharmacologically Active Compounds (Sigma-Aldrich) was purchased from the SickKids Proteomics, Analytics, Robotics & Chemical Biology Centre (SPARC BioCentre). The APExBIO DiscoveryProbe Kinase Inhibitor Library was a gift from Jim Dowling. The OICR Kinase Inhibitor Library was a gift from Rima Al-Awar and David Uehling at the Ontario Institute of Cancer Research. The GSK Published Kinase Inhibitor Set (PKIS) molecules was obtained from GlaxoSmithKline. MEK Inhibitors trametinib, pimasertib, U0126-EtOH and BI-847325 and EGFR inhibitor gefitinib were purchased for further testing from Selleck Chemicals.
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9

Investigating Cell Signaling Pathways

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Antibodies against PDGFRα (#5241), Caspase-3 (#9665), PARP (#9542), Caspase-9 (#9508), Bax (#2772), Bcl-2 (#2872), PI3K (#4257), AKT (#4691), phospho-AKT (#4060), mTOR (#2983), phospho-mTOR (#5536), p38-MAPK (#8690), phospho-p38MAPK (#4511), MEK (#9126), phospho-MEK (#9154), ERK1/2 (#4695), phospho-ERK1/2 (#4370), GAPDH (#2118) were purchased from Cell Signaling Technology (Danvers, MA, USA). Antibody to LC3 (#AL221) was purchased from Beyotime Institute of Biotechnology (Shanghai, China). Antibody to Atg-5 (#ab108327) was obtained from Abcam (Cambridge, MA, USA). Z-VAD-FMK, chloroquine, 3-Methyladenine, U0126-EtOH were from Selleck Chemicals (Houston, TX, USA).
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10

Cellular Signaling Pathway Inhibitors

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P5091, SB203580, SP600125, and U0126-EtOH were purchased form Selleck. HBX-19818 and GNE-6776 were purchased from MCE. CFSE, LPS, CCK-8 reagent, NMP, Tween-80 and PEG400 were purchased from Biosharp (Hefei, China). Clodronate liposomes were purchased from Biolegend. PD-1 antibody was purchased from Invitrogen.
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