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7 protocols using rabbit secondary antibody

1

Kidney Protein Expression Analysis

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The lysates of kidney tissue and renal tubular epithelial cells were used to detect the proteins concentration. The standard procedure of Western blot was used as described, following with the used of these antibodies: Cx32 (1:1000; Abclonal); NLRP3(1:1000; Abcam); GSDMD (1:1000; CST); IL-18(1:1000; Abcam); β-actin (1:50000; Abclonal); Rabbit secondary antibody (1:20000; Abcam). All the Western blots were repeated for more than three times and the images were captured by Tanon 5500 imaging system (Tanon, Shanghai). All images were analyzed by the ImageJ scanning software and the level of proteins were expressed as the relative values to the sham or control groups.
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2

CUT&Tag Protocol for Histone Modifications

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Anti-HNF1A (Proteintech; 22426-1-AP) primary antibody and a rabbit secondary antibody (Abcam; 31,238) were utilized for CUT&Tag analysis. CUT&Tag libraries were prepared using CUT&Tag 3.0 High-Sensitivity Kit (Novoprotein; N259-YH01). In brief, 50,000 cells were prepared and immobilized on concanavalin A beads. Beads are incubated with a primary antibody, followed by incubation with a secondary antibody. Beads were washed and incubated with pA-Tn5. Tn5 was activated by addition of Mg2+ and incubated at 37°C for 1 h. Reactions were stopped by the addition of 10 μL 0.5M EDTA, 3 μL 10% SDS, and 2.5 μL 20 mg/mL Proteinase K to each sample. DNA was extracted with phenol-chloroform and constructed CUT&Tag library according to the manufacturer’s instructions.
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3

Western Blot Analysis of Cellular Proteins

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Cells were harvested by scraper and lysed with Triton buffer 150 mM NaCl, 1% Triton-X100, 0.1% SDS, 50 mM Tris pH8.0, and protease inhibitor cocktail (Thermo Fisher) at 4°C for 20 min. The supernatant was collected after centrifugation for 10 min. Supernatant was transferred to a new tube and the total protein concentration was measured using NanoDrop One spectrophotometer. Equal volume 2X Laemmli sample buffer (1610737, Bio-Rad, Hercules, CA) were added to the supernatant and then heated in 95°C for 10 min. Equal amount proteins were resolved by SDS-PAGE gel for western blot analysis. Antibodies against AKAP9 (1 : 1000), GAPDH (1 : 3000), E-cadherin (1 : 2000), and Rabbit secondary antibody (1 : 5000) were purchased from Abcam (Cambridge, MA). The western blot images were developed using chemiluminescence detection kit (WBKLS0500, Millipore, Billerica, MA) and the ChemiDoc Imaging System from Bio-Rad.
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4

Protein Expression Analysis Protocol

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Protein expression was detected after extraction of proteins in tissues and cells using radio immunoprecipitation assay buffer (Invitrogen). After being separated by sodium dodecyl sulfate polyacrylamide gel electrophoresis, the protein was transferred to a polyvinylidene fluoride membrane (Millipore Corp, Billerica, MA, United States). After being sealed with 5% skim milk for 2 h, the membrane was incubated with primary antibodies at 4°C overnight, followed by 2-h incubation with corresponding rabbit secondary antibody (1:4,000, Abcam, Cambridge, United States) at 37°C. Immunoreactive proteins were visualized using enhanced chemiluminescence (Millipore). The primary antibodies included α-SMA (1:1,000; Abcam), fibronectin (1:1,000; Abcam), collagen IV (1:1,000; Abcam), p53-upregulated modulator of apoptosis (PUMA, 1:1,000, #24633, CST), apoptotic protease activating factor 1 (Apaf1, 1:1,000, ab2001, Abcam), B-cell CLL/lymphoma 2 (Bcl-2, #3498, CST), TGF-β1 (1:1,000, #MA5-15065, Thermo Fisher), and glyceraldehyde-3-phosphate dehydrogenase (GAPDH, 1:1,000; Abcam).
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5

MIC-1 Modulates Cellular Antioxidant Response

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MIC-1 (98% purity) was kindly provided by Ilya Raskin (Rutgers University, New Brunswick). SFN was obtained from LKT Laboratories, Inc (St. Paul, MN), bicinchoninic acid assay (BSA) and bovine serum albumin (BSA) from Thermo Fisher Scientific (Rockford, IL). Dulbecco’s modified Eagle medium (DMEM), versene, and trypsin-EDTA (0.25%) were purchased from Gibco (Carlsbad, CA). Fetal bovine serum (FBS) was purchased from Gemini Bio Products (West Sacramento, CA). LPS was purchased from Enzo Life Sciences (Farmingdale, New York). β-actin (sc-47778) and GCLC (sc-390811) primary antibodies were purchased from Santa Cruz Biotechnology (Santa Cruz, CA), and HO-1 (ab68477) was purchased from Abcam (Cambridge, MA). Mouse secondary antibody was purchased from Santa Cruz Biotechnology and rabbit secondary antibody from Abcam.
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6

Immunofluorescent Labeling of Mouse Brain

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Mice were anesthetized with sodium pentobarbital, and transcardially perfused with 20 mL of 4% paraformaldehyde. The brain was removed and immersed in the same fixative at 4°C for 12 h. The tissue was embedded in paraffin and cut with a microtome (CV 5030; Leica, Germany) into 4um sections. The sections were incubated in 10% bovine serum in PBS containing 0.1% Triton X-100 for 30 min. Anti-mouse GFAP primary antibody (1:500; Abcam) was added to the slices, incubating at 4°C overnight. After washing, the sections were added with a rabbit secondary antibody (1:1000; Abcam) conjugated to AlexaFluor 488 and kept in the dark at room temperature for 2 h. DAPI was added to stain the cell nuclei. Micrographs were taken with a fluorescence microscope.
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7

Western Blot Analysis of Epithelial-Mesenchymal Transition Markers

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After extracting the proteins in cells using RIPA buffer (Invitrogen), the protein concentration was detected. After separating the protein samples by sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE), the proteins were transferred to polyvinylidene fluoride membranes (Millipore, USA). Subsequently, after soaking for 2 h in 5% skim milk, the membranes were incubated with primary antibodies overnight at 4°C. Then, the membranes were coated with rabbit secondary antibody (1:4,000; Abcam, UK) for 2 h at 37°C. The protein bands were observed using enhanced chemiluminescence reagents (Millipore). The primary antibodies included E-cadherin (1:1,000; Abcam), vimentin (1:1,000; Abcam), α-smooth muscle actin (α-SMA) (1:1,000; Abcam), fibronectin (FN) (1:1,000; Abcam), collagen I (Col I) (1:1,000; Abcam), collagen IV (Col IV) (1:1,000; Abcam), BMP7 (1:1,000; Abcam), and GAPDH (1:1,000; Abcam).
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