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5 protocols using urea

1

Plasma Biomarkers in Animal Model

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Blood was obtained by cardiac puncture. Plasma was prepared by centrifugation at 3000 rpm for 10 min. urea, creatinine and fT4 was measured in the central laboratory medicine unit of the University Hospital of Cologne using the kinetic UV test (urea, Roche Diagnostics), creatinine plus test vers.2 (creatinine, Roche Diagnostics) and fT4 II test (fT4, Roche Diagnostics). Significance was calculated using a two-tailed Student’s t test for all measurements.
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2

Melanogenesis Inhibition Assay with L-DOPA

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The following reagents were sourced from Sigma-Aldrich (Saint Louis, MI, USA): L-DOPA (Cat #D9628); urea (Cat #U5378); thiourea (Cat #T7875); C7BzO (Cat #C0856); Dulbecco’s Modified Eagle Medium (DMEM; Cat#D6429) (New York, NY, USA); cOmplete™ Protease Inhibitor Cocktail (Cat #11697498001) (Roche, USA); tris(2-carboxyethyl)phosphine (TCEP; Cat #C4706); ammonium bicarbonate (Cat #A6141); Empore™ Extraction Disk Cartridge C18 (Cat #66873-U) (Supelco, Bellefonte, PA, USA); acetonitrile hypergrade for LC–MS LiChrosolv® (Cat #1.00029) (Truganina, Australia); triflouroacetic acid (Cat #T6508); tyrosinase (Cat #T3824); boric acid (Cat #1.00165); sodium hyrdoxide (Cat # 221465); ascorbic acid (Cat # A4544); hydroxylamine solution (Cat # 467804). The following reagents were sourced from Thermo Fisher: TrypLE™ Express Enzyme (Cat #12604013) (Gibco, New York, NY, USA); Pierce™ BCA Protein Assay Kit (Cat #23225) (Thermo Scientific, Rockford, IL, USA). The UCP-5 peptide was synthesised by the Payne Laboratory with sequence: EEGVLALYSGIAPALLR.
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3

Mass Spectrometry Sample Preparation

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Urea, sodium chloride, EDTA, bovine aprotinin, leupeptin (Roche), PMSF, sodium fluoride, Phosphatase Inhibitor Cocktail 2, and Phosphatase Inhibitor Cocktail 3, O-(2-acetamido-2-deoxy-d-glucopyranosylidene)amino-N-phenylcarbamate, iodoacetamide, and ammonium formate were purchased from Sigma–Aldrich. Tris–HCl, 1,4-DTT, and all MS-grade solvents, including water, formic acid, trifluoroacetic acid, and acetonitrile (ACN), were purchased from Thermo Fisher Scientific. Lysyl endopeptidase (Lys-C) was purchased from Wako Chemicals, and trypsin protease was purchased from Promega.
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4

Tissue Lysis and Protein Extraction

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LV samples (50 mg) were obtained then immediately snap-frozen and stored in liquid nitrogen. The samples were pulverized under liquid nitrogen into a fine powder, which was homogenized in a lysate buffer containing 8 mol/l urea, 1 mol/l dithiothreitol (13 (link)) (Roche Diagnostics GmbH, Mannheim, Germany), leupeptinand, aprotinin, pepstatin (all 1 mg/ml), radioimmunoprecipitation assay buffer and 0.1% phenylmethanesulfonyl fluoride (w/v; Sigma-Aldrich, St. Louis, MO, USA) and then lysed on ice for 30 min. The samples were lysed further by sonication for 2 min. The total lysate was centrifuged for 15 min at 4°C and 10,000–14,000 × g, and the final supernatant was collected.
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5

Urine Composition Analysis Protocol

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Urine was collected over three 12-hour periods with participants encouraged to void before entering the room. Collected urine volume was measured using digital weighing scales (Salter 323, Salter, UK) and analysed enzymatically for UREA and creatinine (UREA and CREAT kits, respectively from Roche, DE) using an automated clinical chemistry analyser (Cobas c702, Roche, DE).
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