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3 protocols using ab15830

1

Transcription Factor and miRNA Profiling

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Whole-cell extracts were prepared, and approximately 10-30 μg of protein was resolved on SDS-PAGE using antibodies against REST (#07-579, Upstate), Oct4 (#ab19857, Abcam), anti-hemaglutinin (HA) (H9658, Sigma), Sox2 (#ab15830, Abcam; #2748, Cell Signaling), β-actin (A5316, Sigma), and α-tubulin (#MMS-407R, Covance).
mESCs were transfected with pre-miR21 (Pre-miR miRNA precursor molecule; AM17100, Ambion) or control, as described earlier (Singh et al., 2008 (link)). mESCs were transfected using AMAXA nucleofection reagent. Cells were seeded onto gelatin-coated plates and were harvested at specific time points for isolation of total RNA using TRIzol and whole-cell extracts for Western blot analysis. The miRNA quantifications were carried out using total RNA and the mirVana (Catalog number AM1560, Life Technologies) qRT-PCR miRNA detection kit as per the manufacturer's protocol. The relative expression levels of individual miRNA were calculated after normalization with 5S rRNA expression levels.
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2

Characterizing Pluripotent & Neural Stem Cells

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For alkaline phosphatase (AP) staining, hESCs were fixed with 4% paraformaldehyde (PFA) in PBS for 40 s, rinsed once with PBS and stained using a leukocyte alkaline phosphatase kit (Sigma-Aldrich, St Louis, MO, USA) according to the manufacturer's protocol. For immunofluorescent staining, cells were fixed with 4% PFA for 15 min. The fixed cells were washed with PBS and incubated in 0.2% Triton X-100 for 20 min, then washed with PBS and incubated in blocking buffer containing 20% FBS, 10% Glycerol, 100 nM Glycine and 0.1% Triton X-100 for 30 min at room temperature. The cells were then incubated with primary antibodies against Oct4 (Abcam, ab19857), SSEA-4 (Millipore, MAB4304), Nanog (Abcam, ab21624), Nestin (Millipore, MAB5326), Sox2 (Abcam, ab15830), Sox1 (Abcam, ab22572), Pax6 (DSHB, P3U1), Musashi1 (Abcam, ab21628), Tuj1 (Covance, PRB-435P), GFAP (Invitrogen, 13-0300) or O4 (R&D, MAB1326) overnight at 4 °C. The following day cells were washed with PBS and incubated in the appropriate secondary antibodies conjugated to Alexa Fluor 546 or Alexa Fluor 488 (Invitrogen) for one hour at room temperature. Nuclei were counterstained with Hoechst 33342 for 10 min. Images were taken with an Olympus IX71 inverted fluorescent microscope or an Olympus FV10i confocal microscope.
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3

Immunocytofluorescence Analysis of iPSCs and Neurons

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Immunocytofluorescence studies were performed according to standard protocols. The iPSCs and neurons were stained with primary antibodies detecting Sox 2 (ab15830, Abcam, Cambridge, UK), Neurofascin (ab31457, Abcam), β-tubulin III (T8660, Sigma-Aldrich), and MAP2 (M9942, Sigma-Aldrich). Alexa Fluor 488 and Alexa Fluor 594 were used as secondary antibodies (Life Technologies). Images were acquired using a Leica SP5 confocal microscope system (Leica Biosystems, Wetzlar, Germany). ImageJ software was used to assess fluorescence intensity [14] .
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