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7 protocols using cfse proliferation dye

1

T Cell Proliferation and Cytokine Assay

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T cells were labeled with 5 μmol/L CFSE proliferation dye (Invitrogen, Carlsbad, CA, USA) and cultured in the presence of an anti-CD28 antibody (0.5 μg/ml)- and anti-CD3 antibody (1 μg/ml)-coated plate as per the manufacturer’s instructions (eBioscience). After 72 h, cells were harvested, stained with CD4+-APC and CD8+-PE/CY7 for 30 min at 4°C and analyzed by flow cytometry. Cell divisions were demarcated according to CFSE staining brightness. The levels of IFN-γ in the supernatant were measured using ELISA according to the manufacturer’s instructions (Boster, Wuhan, China), and the absorbance was read at 450 nm using a microplate spectrophotometer (Thermo Fisher Scientific, Waltham, MA, USA).
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2

Regulatory T Cell Functional Assay

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Foxp3+ Treg-like cells generated during WT ITK inhibition (CPI-818) under Th17 conditions, and iTregs generated during activation under iTreg conditions, were stained with cell surface markers and sort purified (>95% purity) to obtain CD4+ Foxp3-RFP+ Treg-like cells and CD4+ Foxp3-RFP+ iTregs. Sort purified naïve responding T cells were labelled with CFSE proliferation dye (Invitrogen) and cocultured with Foxp3+ Treg-like cells or iTregs in presence of anti-CD3 (1 μg/ml), followed by analysis using flow cytometry.
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3

T Cell Proliferation Assay with Polarized Macrophages

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96 well round bottom plates were coated with 1 μg/ml CD3 (145–2C11, BD Biosciences) and 0.5 μg/ml CD28 (37.5, BD Biosciences). Macrophages were M1 (250 ng/ml LPS) or M2 (20 ng/ml IL-4) polarized prior to the experiment for 16 h. CD4+CD25 T cells were stained with CFSE proliferation dye (Thermo) and co-cultured with macrophages at a 1:2 ratio for 4 days in RPMI supplemented with 20 ng/ml recombinant IL-2 (R&D Systems). Upon collection, samples were stained with LIVE/DEAD™ Fixable Near-IR Stain Dye (Thermo) and analyzed by flow cytometry. Proliferation modeling was performed using Flow-Jo 10.1 and results normalized to the T cell only control group.
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4

Cytokine-Mediated T Cell Polarization

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Mouse and human cytokines used for in vitro polarizations as well as anti-human CD3 and anti-human CD28 were purchased from Biolegend. Anti-mouse CD3, anti-mouse CD28 and mouse and human neutralizing antibodies to IL-4 and IFN-γ were purchased from BioXCell. Anti-CK2α and anti-CK2β antibodies for detection by flow cytometry were purchased from AbCam and Calbiochem, respectively. Secondary antibodies for flow cytometry were purchased from Jackson ImmunoResearch. Flow cytometry antibodies against mouse CD4, IL-17A, IFN-γ, CD25 and CD45.1 and human CD3, CD4 and Foxp3 were purchased from Biolegend. Flow cytometry antibodies against mouse CD44, Foxp3 and GM-CSF and human IL-17A were purchased from eBioscience. Aqua Live/Dead Viability dye, CFSE proliferation dye and 2-NBDG were purchased from ThermoFisher Scientific. Flow cytometry antibodies and isotype controls for phosphorylated S6, Akt, STAT3, STAT5 and SMAD2/3 were purchased from Cell Signaling. Immunoblotting antibodies against phosphorylated T389, S371 and total S6 Kinase p70 and phosphorylated S129, S473 and total Akt were purchased from Cell Signaling, and antibody against mouse β-actin was purchased from abcam.
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5

Murine T-cell Polarization Assay

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Murine cytokines used for in vitro polarizations were purchased from Biolegend. Anti-mouse CD3, anti-mouse CD28 and neutralizing antibodies to murine IL-4 and IFN-γ were purchased from BioXCell. Antibodies to CK2α, phosphorylated S129 Akt, total Akt, phosphorylated T24 FoxO1 and total FoxO1 were purchased from Cell Signaling. Antibody to mouse β-actin was purchased from Abcam. Flow cytometry antibodies against mouse CD3, CD4, CD8, CD25, IL-17A and IFN-γ were purchased from Biolegend. Flow cytometry antibodies against mouse CD44, CD62L, CD69, Foxp3 and GM-CSF were purchased from eBioscience. Flow cytometry antibodies for phosphorylated STAT3, STAT5, S6 and Akt were purchased from Cell Signaling. Aqua Live/Dead Viability dye and CFSE proliferation dye were purchased from ThermoFisher Scientific.
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6

Splenic Immune Cell Profiling

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Spleens were dissociated in FACS buffer (0.5% BSA in PBS) to generate single-cell suspensions. Splenocytes were passed through a 70um filter and then RBC lysed using ACK lysis buffer (0.15M NH4CL, 1mM KHC3, 0.1mM Na2EDTA) for 5 minutes at room temperature. Samples were stained with Ghost Dye Violet 510 (Tonbo) for 20 minutes at 4°C, then stained with the following antibodies: CD4 (GK1.5), B220 (RA3–6B2), CD8b (YTS156.7.7), CXCR3 (CXCR3–173), KLRG1 (2F1/KLRG1), Ki67 (SolA15), CD44 (1M7), CD3 (145–2C11), CD11c (N418), MHC-II (M5/114.15.2), CD11b (M1/70), XCR1 (ZET), DCIR2 (33D1), CD25 (PC61), CD45.1 (A20), CD45.2 (104), NK1.1 (PK136), Ly6G (1A8). In some experiments, cells were labeled with CFSE proliferation dye (ThermoFisher) following the manufacturer’s protocol. For intracellular staining, samples were fixed and permeabilized using the eBioscience FoxP3 staining kit (ThermoFisher). Samples were processed using an LSR Fortessa Analyzer (BD) and analyzed using FlowJo software.
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7

Splenic Immune Cell Profiling

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Spleens were dissociated in FACS buffer (0.5% BSA in PBS) to generate single-cell suspensions. Splenocytes were passed through a 70um filter and then RBC lysed using ACK lysis buffer (0.15M NH4CL, 1mM KHC3, 0.1mM Na2EDTA) for 5 minutes at room temperature. Samples were stained with Ghost Dye Violet 510 (Tonbo) for 20 minutes at 4°C, then stained with the following antibodies: CD4 (GK1.5), B220 (RA3–6B2), CD8b (YTS156.7.7), CXCR3 (CXCR3–173), KLRG1 (2F1/KLRG1), Ki67 (SolA15), CD44 (1M7), CD3 (145–2C11), CD11c (N418), MHC-II (M5/114.15.2), CD11b (M1/70), XCR1 (ZET), DCIR2 (33D1), CD25 (PC61), CD45.1 (A20), CD45.2 (104), NK1.1 (PK136), Ly6G (1A8). In some experiments, cells were labeled with CFSE proliferation dye (ThermoFisher) following the manufacturer’s protocol. For intracellular staining, samples were fixed and permeabilized using the eBioscience FoxP3 staining kit (ThermoFisher). Samples were processed using an LSR Fortessa Analyzer (BD) and analyzed using FlowJo software.
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