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12 protocols using erythromycin

1

Antibiotic and Dexamethasone Effects on IL-13-stimulated MRC5 Cells

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MRC5 cells, a human embryonic lung fibroblast cell line (Riken BioResource Center, Tsukuba, Japan), were cultured with Dulbecco modified Eagle medium (Sigma-Aldrich, St. Louis, MO, USA) supplemented with 10% fetal calf serum, 100 μg/mL streptomycin, and 100 U/mL penicillin G. MRC5 cells (7 × 104 cells per well) were placed in 24-well plates (Nunc, Roskilde, Denmark) and cultured in 5% CO2 humidified atmosphere at 37 °C with or without clarithromycin, erythromycin (Wako Pure Chemical Industries, Osaka, Japan), josamycin (Sigma-Aldrich), ampicillin (Sigma-Aldrich), or dexamethasone (Wako Pure Chemical Industries). clarithromycin was kindly supplied by Taisho Toyama Co., Ltd. (Tokyo, Japan). clarithromycin, erythromycin, josamycin, and ampicillin were dissolved in ethanol (EtOH, Wako) to therapeutic concentrations [19 (link), 20 (link)]. dexamethasone was dissolved in EtOH to 100 nM [21 (link)]. The final concentration of EtOH added to cells was 0.5%. After 24 h of culture, cells were stimulated by 50 ng/mL human recombinant IL-13 (Peprotech, Rocky Hill, NJ, USA) for 24 h. Cell viability was evaluated using WST-8 assay (Cell Count Reagent SF, Nacalai Tesque, Kyoto, Japan).
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2

Compound Preparation for Cell Assays

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Primaquine and erythromycin were obtained from FUJIFILM Wako Pure Chemical Corporation (Tokyo, Japan). Aflatoxin B1 and dimethyl fumarate were obtained from Sigma–Aldrich (St. Louis, MO, USA). Terbinafine was obtained from Tokyo Chemical Industry (Tokyo, Japan). These compounds were dissolved in dimethyl sulfoxide (DMSO, Sigma–Aldrich). The final concentration of DMSO in culture medium was less than 0.1%. SDS and D-mannitol were purchased from Nacalai Tesque (Kyoto, Japan) and dissolved in distilled water.
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3

Rikkunshito Extract Granules: Standardized Formulation

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Tsumura rikkunshito extract granules for prescription (product code TJ-43, Tsumura & Co. lot numbers E24652 and H05142, Tokyo, Japan) were used for the investigational product. It was manufactured according to GMP, and adapted to factory release test. The sample of the investigational drug used in this study is retained in Tsumura & Co. 7.5 g of this herbal preparation contains 4.0 g of dried extract obtained by spray drying of a hot water extract of a mixture of eight crude drugs: 4.0 g of Atractylodis lanceae rhizoma (Compositae; atractylodes lancea rhizome), 4.0 g of Ginseng radix (Araliaceae; ginseng), 4.0 g of Pinelliae tuber (Araceae; pinellia tuber), 4.0 g of Poria (Polyporaceae; poria sclerotium), 2.0 g of Zizyphi fructus (Rhamnaceae; jujube), 2.0 g of C. unshiu pericarpium (Rutaceae; citrus unshiu peel), 1.0 g of G. radix (Leguminosae; glycyrrhiza), and 0.5 g of Zingiberis rhizoma (Zingiberaceae; ginger). The standard components contained in rikkunshito and digoxin were supplied by Tsumura & Co. Atractylodin and atractylenolide III were supplied by Tsumura & Co. and Wako Pure Chemical Industries, Ltd. (Osaka, Japan). Erythromycin was purchased from Wako Pure Chemical Industries, Ltd. (±)-Warfarin-d5 was purchased from C/D/N ISOTOPES INC. (Pointe-Claire, Quebec, Canada). Other chemicals were purchased from commercial sources.
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4

Antibiotic-Supplemented Food Protocol

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The antibiotic-supplemented food contained 50 μg/mL tetracycline (Fujifilm Wako Pure Chemicals Corporation, Osaka, Japan, Cat#205-08591), 50 μg/mL ampicillin (Fujifilm Wako Pure Chemicals Corporation, Osaka, Japan, Cat#016-23301), 50 μg/mL kanamycin (Fujifilm Wako Pure Chemicals Corporation, Osaka, Japan, Cat#117-00341), and 15 μg/mL erythromycin (Fujifilm Wako Pure Chemicals Corporation, Osaka, Japan, Cat#057-07151) in standard fly food. Newly enclosed flies were grown on antibiotic-supplemented food for four days. On the fourth day, the internal bacterial load was counted.
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5

Cultivation of Treponema denticola Strains

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We maintained T. denticola wild-type strain ATCC 35405 (Chan, et al., 1993 (link)), the major outer sheath protein (Msp)-deficient mutant DMSP3 (Sano, et al., 2014 (link)), and the dentilisin-deficient mutant K1 (Ishihara, et al., 1998 (link)) in TYGVS medium, containing tryptone (Becton Dickinson, Sparks, MD, USA), yeast extract (Becton Dickinson), gelatin (Becton Dickinson), volatile fatty acids, and rabbit serum (Ohta, et al., 1986 (link)). The cells were cultured at 37 °C under anaerobic conditions, as previously described (Ishihara & Kuramitsu, 1995 (link)). For the mutant strains, we supplemented the medium with 40 μ/mL erythromycin (Fujifilm Wako Pure Chemical Corporation, Tokyo, Japan). We also used serum-free TYGVE medium, which is similar to TYGVS but contains 1% EX-CYTE (Millipore, Bedford, MA, USA) instead of rabbit serum.
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6

Fluorescent Listeria Monocytogenes Generation

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L. monocytogenes 1b 1684 was grown in tryptic soy broth (BD Diagnosis Systems, Sparks, MD, USA) at 37 °C and stored at −80 °C until use [83 (link)]. pJEBAN6 plasmid encoding red fluorescence protein (DsRedEx) was transferred into L. monocytogenes by electroporation to obtain a red fluorescent stain [84 (link)]. L. monocytogenes harboring pJEBAN6 plasmid were cultured in tryptic soy broth supplemented with 5 µg/mL erythromycin (Wako Pure Chemical Industries, Osaka, Japan).
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7

Chemical Compound Acquisition for Research

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Erythromycin, clarithromycin, roxithromycin, diltiazem, ritonavir, ketoconazole, fluconazole, cimetidine, ticlopidine, omeprazole, fluvoxamine, paroxetine, fluoxetine, quinidine, aflatoxin B1, and sterigmatocystin were obtained from Wako, Japan. Gestodene and mifepristone were obtained from Tokyo Chemical Industry, Japan. G418 was obtained from Funakoshi, Japan. Ethinylestradiol, rifampicin, tienilic acid, terbinafine, hypoxanthine, aminopterin, and thymidine (HAT) and 4,6-diamidino-2-phenylindole (DAPI) were obtained from Sigma Aldrich, USA. All other chemicals were of the highest grade commercially available.
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8

Staphylococcus aureus Strain Characterization

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S. aureus strains ATCC 29213 and JE2 and the Tn-insertion mutant library derived from strain JE2 (NTML) [23 (link)] were used in this study. Mueller–Hinton broth (MHB) (Becton Dickinson, Sparks, MD, USA) and cation-adjusted MHB (caMHB) (Becton Dickinson) were used for MIC determination. Stock solutions of NTML strains were stored in 25% (v/v) glycerol at −70 °C until use and streaked onto a tryptic soya agar (TSA) plate (Nissui, Tokyo, Japan) containing 5 µg/mL erythromycin (FUJIFILM Wako Pure Chemical Corp.).
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9

Antibiotic Cocktail Administration in α-Synuclein Study

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As previously described [36 (link)], mice were treated with antibiotics, which were administered daily starting from seven days before the injection of α-synuclein PFF until the end of the experiments. The antibiotics were administered as a cocktail provided in sterile drinking water and included ampicillin (1 g/L; Nacalai Tesque, Kyoto, Japan), vancomycin (0.5 g/L; Shionogi Pharma), neomycin (0.5 g/L; Nacalai Tesque), gentamycin sulfate (100 mg/L; Nacalai Tesque) and erythromycin (10 mg/L; Sigma-Aldrich Japan, Tokyo, Japan). We prepared stock solutions of ampicillin, vancomycin and neomycin by dissolving them in sterilized water at a concentration of 50 mg/mL. erythromycin was dissolved in 99.5% ethanol (FUJIFILM Wako Pure Chemical) at a concentration of 50 mg/mL, while gentamycin was dissolved in sterilized water at concentration of 25 mg/mL. The stock solutions were aliquoted and stored at −30 °C for two months. For preparation of an antibiotic cocktail, the stock solutions were mixed with 300 mL of sterilized water. The average amount of water intake was 5 to 7 mL/mouse/day.
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10

Fluorescent Listeria monocytogenes strains

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L. monocytogenes 1b 1684 was grown in tryptic soy broth (BD Biosciences, Sparks, MD) at 37 °C and stored at −80 °C until use29 (link). pJEBAN3 plasmid encoding yellow fluorescent protein (YFP) and pJEBAN6 plasmid encoding red fluorescence protein (DsRedEx), was transferred into L. monocytogenes by electroporation to give yellow and red fluorescent strain, respectively30 (link). L. monocytogenes harboring pJEBAN3 or pJEBAN6 plasmid was cultured in tryptic soy broth supplemented with 5 μg/ml erythromycin (Wako Pure Chemical Industries, Osaka, Japan).
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