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8 protocols using femto chemiluminescence substrate

1

Immunoblotting Assay for Whole Cell Lysates

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Immunoblotting assays for whole cell lysates of cells and tissues were performed as previously described (Tarrago et al., 2018 (link)). Tissues or cells were homogenized and lysed in NETN buffer (20 mM Tris-HCl (pH 8.0), 100 mM NaCl, 1 mM EDTA and 0.5% Nonidet P-40) supplemented with 50 mM β-glycerophosphate, 5 mM NaF and a protease inhibitor cocktail (Roche). After 30 min of incubation at 4°C, the samples were centrifuged at 12,000 r.p.m. for 10 min at 4°C. Protein concentrations in the supernatants were determined by Bio-Rad protein assay. Lysates were separated by SDS–PAGE, and electrophoretically transferred to polyvinylidene difluoride (PVDF) membranes (Immobilon-P; Millipore). Enhanced chemiluminescence detection was performed using Super-Signal West Pico or Femto Chemiluminescence Substrate (Thermo Scientific). Films were scanned and densitometry was performed using ImageJ. The following antibodies and their dilutions were used for immunoblotting: mouse CD38 (R&D Systems; AF4947, 1:1,000), CD45 (Abcam; AB40763; 1:1000), Phospholamban (PLN) (Invitrogen; MA3-922; 1:1000), CYP3a4 (Proteintech, 18227-1-AP; 1:1000), actin (Cell Signaling Technology; 8457, 1:5,000) and GAPDH (Cell Signaling Technology; 97166, 1:5,000).
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2

Western Blot Analysis of Mouse Heart Tissue

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Mouse heart tissue was lysed in RIPA buffer (20 mM Tris-HCl, pH 8.0, 100 mM NaCl, 1 mM EDTA, 0.5% Nonidet P-40) supplemented with 5 mM NaF, 50 mM 2-glycerophosphate, and a protease inhibitor cocktail (Roche Diagnostics). After 20 minutes of lysis, protein lysates were cleared by centrifugation at 12,000 rpm at 4°C for 10 minutes. The resulting supernatants were quantified for protein using a BioRad protein assay. The proteins were fractionated by SDS-PAGE, electro-transferred to Immobilon-P membranes, blotted with the indicated primary antibodies followed by appropriate horseradish peroxidase-conjugated secondary antibodies, and detected using SuperSignal West Pico or Femto Chemiluminescence Substrate (Thermo Fisher Scientific). Membranes were stripped and probed with tubulin antibody to control for equal gel loading and transfer. Films were scanned and densitometry was performed using ImageJ software.
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3

Klotho Protein Analysis in Tissue

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Tissue extracts were homogenized using a Bead Mill 24 homogenizer (Waltham) and lysed in NETN buffer (20 mM Tris-HCl, pH 8.0, 100 mM NaCl, 1 mM EDTA, 0.5% Nonidet P-40), 5 mM NaF, a protease inhibitor cocktail (Millipore Sigma), and 5 mM nicotinamide. After incubating 30 min at 4 °C, samples were centrifuged at 15,000 rpm for 10 min at 4 °C. Protein concentrations of the supernatants were determined by the Bradford protein assay (BioRad). Lysates were separated by SDS-PAGE and transferred by electrophoresis to PVDF membranes (Millipore Sigma). Membranes were immunoblotted with primary mouse α-Klotho antibody (R&D Systems, AF1819) at 1:1000 dilution and GAPDH antibody (Cell Signaling Technology, 97166) at 1:1000 dilution. Enhanced chemiluminescence detection was performed using SuperSignal West Pico or Femto Chemiluminescence Substrate (Thermo Scientific). All blots were imaged with a GelDoc Go Imaging System (BioRad).
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4

Protein Extraction and Western Blotting

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Tissue extracts or cells were homogenized and lysed in NETN buffer (20 mM Tris-HCl, pH 8.0, 100 mM NaCl, 1 mM EDTA, 0.5% Nonidet P-40) supplemented with 50 mM β-glycerophosphate, 5 mM NaF, a protease inhibitor cocktail (Roche), 5 mM nicotinamide, and 5 μM trichostatin A (TSA, Cell Signaling). For PARylation analysis only, 100 μM of tannic acid was added to the lysis buffer. After 30 min of incubation at 4°C, the samples were centrifuged at 12,000 rpm for 10 min at 4°C. The protein concentration of the supernatant was determined by BioRad protein assay. The lysates were separated by SDS-PAGE, and electrophoretically transferred to PVDF membranes (Immobilon®-P; Millipore). Membranes were immunoblotted with the indicated antibodies as shown in key resources table. Enhanced chemiluminescence detection was performed using SuperSignal West Pico or Femto Chemiluminescence Substrate (Thermo Scientific). Films were scanned and densitometry was performed using ImageJ.
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5

Western Blotting Analysis of Cellular Proteins

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Western blotting analysis was performed on lysates from tissue or cells in RIPA buffer (Sigma‐Aldrich) supplemented with 10 mM sodium fluoride, 0.5 mM sodium orthovanadate, 1:100 protease inhibitor cocktail (Sigma‐Aldrich), and 1 mM phenylmethylsulfonyl fluoride. Equal amounts of protein (40 μg) were heat‐denatured in sample‐loading buffer (50 mM Tris–HCl, pH 6.8, 100 mM DTT, 2% SDS, 0.1% bromophenol blue, 10% glycerol), resolved by SDS‐polyacrylamide gel electrophoresis, and then transferred to nitrocellulose membranes (Protran, nitrocellulose membrane, Amersham). The filters were blocked with Tris‐buffered saline containing 0.05% Tween and 5% non‐fat dry milk (Sigma‐Aldrich) and then incubated overnight with the indicated dilutions of different primary antibodies (Table2). All secondary horseradish peroxidase‐conjugated antibodies (BioRad) were diluted 1:5000 in Tris‐buffered saline‐Tween and 2.5% non‐fat dry milk (Sigma‐Aldrich). After incubation with SuperSignal Pico or Femto chemiluminescence substrate (Thermo Scientific), the polypeptide bands were detected with GelDoc chemiluminescence detection system (BioRad). Quantification of relative densitometry was obtained by normalizing vs. background and housekeeping proteins using the QuantityOne software (BioRad).
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6

Western Blot Protein Quantification

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Micropunch samples of ST and NAc were processed and Western blots were performed as previously described (Benskey et al., 2012 (link)). Protein bands were visualized using a PICO or FEMTO Chemiluminescence substrate (ThermoFisher) kit on a LI-COR Odyssey imager. Bands from each lane of the protein of interest were normalized to the loading control GAPDH using Image Studio version 5.2.
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7

Western Blot Analysis of Proteins

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Extracted proteins were separated by electrophoresis in a 12% polyacrylamide gel and blotted onto polyvinylidene difluoride (PVDF) membrane via semidry western blotting (protein extracted from yeast) or wet western blotting (protein extracted from N. benthamiana). The membrane was blocked with 5% milk in phosphate‐buffered saline and incubated with specific antibodies. Proteins were detected by chemiluminescence with SuperSignal West Dura or FEMTO chemiluminescence substrate (Thermo Scientific).
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8

Immunoblotting Analysis of BMDM Cells

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Immunoblottings for BMDMs were performed as previously described by Tarrago et al. (23 (link)). Cells were homogenized and lysed in NETN buffer (20 mM Tris-HCl (pH 8.0), 100 mM NaCl, 1 mM EDTA and 0.5% Nonidet P-40) supplemented with 50 mM β-glycerophosphate, 5 mM NaF and a protease inhibitor cocktail (Roche). For PARylation analysis 100 μM tannic acid was included in the lysis buffer. After 20 minutes of incubation on ice, the samples were centrifuged at 12,000 rpm for 10 minutes at 4°C. Protein concentrations in the supernatants were determined by Bio-Rad protein assay. Lysates were separated by SDS–PAGE, and electrophoretically transferred to polyvinylidene difluoride (PVDF) membranes (Immobilon-P; Millipore). Enhanced chemiluminescence detection was performed using SuperSignal West Pico or Femto Chemiluminescence Substrate (Thermo Scientific). Films were scanned and densitometry was performed using ImageJ. The following antibodies and their dilutions were used for immunoblotting: anti-mouse pp65 (S536) (Cell Signaling Technology; 3033, 1:1,000) anti-mouse p65 (Cell Signaling Technology; 8242, 1:1,000), actin (Cell Signaling Technology; 8457, 1:5,000), PAR (Trevigen, 4335, 1:1,000).
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