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26 protocols using amyloglucosidase

1

Quantification of Skeletal Muscle Glycogen

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A small amount of skeletal muscle from the vastus lateralis muscle was dissolved in 1 N KOH at 75°C for 30 min. Dissolved samples were neutralized by glacial acetic acid. They were incubated overnight in acetate buffer (0.3 M sodium acetate, pH to 4.8) containing amyloglucosidase (Boehringer Mannheim, Indianapolis, IN) for degradation of glycogen into glucose. The reaction mixture was neutralized with 1 N NaOH. Samples were then analyzed by measuring glucosyl units by the Trinder reaction (Sigma, St. Louis, MO).
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2

Muscle Glycogen Quantification Protocol

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One to two mL of anesthetic (2% lignocaine) was injected for local anesthesia. Subsequently, a no. 14 muscle puncture needle (Temno, McGaw Park, IL, USA) was used to puncture the lateral femoral muscle of the participants to obtain muscle samples (approximately 20–50 mg) [28 (link)]. After the samples were taken, blood was immediately removed, and the samples were stored in liquid nitrogen. To analyze glycogen, the enzyme decomposition method was adopted [29 (link)]. First, 1 N of KOH was used to dissolve the muscle sample. Next, 0.3 M sodium acetate was used to adjust the pH level. Subsequently, amyloglucosidase (Boehringer Mannheim, Mannheim, Germany) was applied to decompose glycogen into glucose. Then, the Trider Glucose Kit (Merck, Darmstadt, Germany) was used, and a spectrophotometer (Beckman, Brea, CA, USA) OD505 nm was utilized to measure the glucosyl unit. The obtained data were depicted as standardized curves to calculate the regression equation. Finally, muscle glycogen level was obtained.
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3

Glycogen Quantification in Muscle

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About 50 mg of red and white gastrocnemius muscles were weighed and dissolved in 1N KOH at 70°C for 30 min. The dissolved homogenate was neutralized by acetic acid and incubated overnight in acetate buffer (0.3 M sodium acetate, pH to 4.8) containing amyloglucosidase (Boehringer Mannheim, Indianapolis, IN, USA). The reaction mixture was neutralized with 1N NaOH. Samples were then analyzed by measuring glucosyl units by the Trinder reaction (Sigma, St. Louis, MO, USA) and normalized by muscle weight.
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4

Glycogen Content Determination

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Approximately 25 mg of skeletal muscle from the deep portion of the V. lateralis was dissolved in 1 M-KOH at 75°C for 30 min. The dissolved homogenate was then neutralised using glacial acetic acid and incubated overnight in acetate buffer (0•3 M-sodium acetate, pH 4•8) containing amyloglucosidase (Boehringer Mannheim), and the reaction mixture was neutralised and the reaction stopped by adding 1M-NaOH after an overnight incubation. The glucosyl units were then measured using a spectrophotometric Trinder reaction (Sigma).
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5

Reagents for enzymatic analysis

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Pepsin (2000 FIP-U/g) was obtained from Merck (Darmstadt, Germany). Amyloglucosidase (14 IU/mg) was from Roche (Manheim, Germany). Pancreatin, αamylase (17.5 IU/mg), ABTS (2, 5, 7, and gallic acid were all obtained from Sigma-Aldrich (St. Louis, MO, USA). 2,4,6-Tris(2-pyridyl)-s-triazine (TPTZ) was from Fluka Chemicals (Madrid, Spain). Iron III-chlorure-6-hydrate were from Panreac (Castellar del Vallés, Barcelona, Spain).
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6

Quantification of Leaf Carbohydrates and Amino Acids

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Soluble sugars and starch were determined in fully expanded leaves according to Kim et al. (2013 (link)). 50 mg frozen flag leaf material were homogenized in liquid nitrogen, dissolved in 0.75 ml of 80% (v/v) ethanol and incubated at 80°C for 60 min. Crude extracts were centrifuged at 14,000 rpm for 5 min at 4°C, and the upper phase was concentrated in a speed vacuum concentrator (Christ, Germany) at 45°C for 180 min. The pellet was resuspended in 0.25 ml HPLC-grade water and shaken for 15 min at 4°C. Hexokinase (HK), phosphoglucoisomerase (PGI) and β-fructosidase were added successively to measure Glc, Fru and Suc as described in Kim et al. (2013 (link)). The residue of sugar extraction was washed twice with 1 ml of 80% (v/v) ethanol. Starch was decomposed with 0.4 ml of 0.2 N KOH for 16 h at 4°C and neutralized with 70 μl of 1 M acetic acid. Hydrolysis of starch was performed using a 1:1 ratio of sample and a buffer containing 50 mM sodium acetate, pH 5.2 and 7 units mg−1 of amyloglucosidase (Roche, Germany). The cocktail was incubated for 16 h at 37°C. Determination of produced Glc was performed according to Kim et al. (2013 (link)).
Free amino acids were extracted and determined as described by Höller et al. (2014 (link)). Analysis and quantification of metabolites were performed essentially as described by Hosseini et al. (2016 (link)).
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7

Quantification of Starch Contents

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The total starch (TS) and resistant starch (RS) contents were determined using the methodology reported by Goñi et al. [28 (link)]. For the determination of the TS, an enzymatic solution of amyloglucosidase (brand Roche, No. 102,857, Roche Diagnostics, Indianapolis, IN, USA) was used. The RS content was quantified using different enzyme solutions and incubation times as follows, 60 min incubation with pepsin, 16 h incubation with α-amylase, and 45 min incubation with amyloglucosidase. The glucose released by enzymatic digestion was quantified using the glucose oxidase/peroxidase assay (SERA-PAK® Plus, Bayer de Mexico, SA de CV), reading the optical densities of the samples at 510 nm. The percentage of starch hydrolysis (the rate of in vitro digestion) was determined according to the methodology reported by Zamudio-Flores et al. [29 ].
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8

Starch Quantification from Rosette Leaves

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Starch was extracted and assayed as previously described (Smith and Zeeman, 2006) . Frozen rosette leaves were ground to a fine powder and homogenized in 8% (v/v) perchloric acid (Ricca Chemical, Arlington, TX, USA). The insoluble fraction was pelleted and washed 3 times in 80% (v/v) ethanol and resuspended in water. Prior to quantification, the samples were boiled 15 min at 95°C to gelatinize the starch and hydrolyzed with α-amylase and amyloglucosidase (Roche, Basel, Switzerland) to release the glucose blocks. Glucose content was then measured by spectrophotometry after a two enzymes reaction with hexokinase and glucose-6-phosphate dehydrogenase (Roche).
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9

Quantification of Soluble Carbohydrates in Plants

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The harvested plants were quickly freeze-dried, and the different organs (leaves, stems and roots) were weighed and ground into powder. The glucose, fructose and sucrose contents in the organs were measured according to the enzymatic method [20 (link)]. The starch contents in the organs were assessed by a method using amyloglucosidase and α-amylase (Roche Diagnostics GmbH, Mannheim, Germany). Starch was not detected in these organs, indicating an absence of starch in this species. Therefore, starch was not measured in the experiment. Next, another important polysaccharide, fructan, was measured using an enzymatic Fructan Assay Kit (Megazyme Ltd., I Wicklow, reland), and a high amount of fructans, instead of starch, was observed in the plants. Thus, the fructan content in various plant parts was analyzed using the same Fructan Assay Kit.
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10

Enzymatic Carbohydrate Analysis Protocol

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Pepsin (2000 FIP-U/g) and glucose were obtained from Merck (Darmstadt, Germany). Amyloglucosidase (14 IU/mg) was from Roche (Manheim, Germany). Pancreatin, αamylase (17.5 IU/mg), ABTS (2, 5, 7, , p-coumaric acid, gallic acid and quercetin were all obtained from Sigma-Aldrich (St. Louis, MO, USA).
2,4,6-Tris(2-pyridyl)-s-triazine (TPTZ) was from Fluka Chemicals (Madrid, Spain).
Dinitrosalicylic acid and iron III-chlorure-6-hydrate were from Panreac (Castellar del Vallés, Barcelona, Spain).
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