The largest database of trusted experimental protocols

421 protocols using eclipse e100

1

Histological and IHC Analysis of Prostate

Check if the same lab product or an alternative is used in the 5 most similar protocols
The prostates were immediately fixed in 4% paraformaldehyde at 4 °C for 24 h and then in 50% ethanol before processing for histological studies. Serial sections (5 μm thickness; 1 section per slide) were performed for histological and immunohistochemistry (IHC) analyses. For histology, sections were subjected to hematoxylin and eosin (H&E) staining and were examined using a light microscope (Nikon Eclipse E100, Tokyo, Japan). Fields were selected following systematic random sampling scheme, and the epithelial thickness was measured using ImageJ software. For IHC studies, after deparaffinization and dehydration, sections were washed with 3% H2O2 for 10 min at room temperature, and non-specific binding of immunoglobulins was blocked with 2% normal goat serum (diluted 1:10 in PBS) for 30 min at room temperature. Sections were boiled for 30 min in critic acid (pH 6.0) for antigen retrieval. After blocking, sections were incubated overnight with primary antibodies, as follows: Ki-67, C-Caspase-3, C-Caspase-8, C-Caspase-9 (Proteintech Group, Inc). Images were acquired using a light microscope (Nikon Eclipse E100, Tokyo, Japan).
+ Open protocol
+ Expand
2

Histomorphological Analysis of Bone and Organs

Check if the same lab product or an alternative is used in the 5 most similar protocols
After subjecting to micro-CT analysis, right femurs were decalcified in 10% EDTA for 3 weeks, and embedded in paraffin before sectioning (5 μm, longitudinally oriented). Bone sections were subjected to H&E and Goldner’s trichrome staining according to the standard protocol. The paraffin sections of the heart, liver, lung, and kidney were subjected to H&E staining according to the standard protocol. For immunohistochemical staining, the primary antibodies used were specific for Ocn (1:100, Abcam ab93876, USA) or Hoxa10 (1:100, Santa Cruz Biotechnology sc-271428, USA). Sections were examined with a microscope (Eclipse E100, Nikon, Japan). For immunofluorescence staining of GFP or Ocn, bone sections were stained with individual primary antibodies to GFP (1:1000, Abcam ab1218, USA) or Ocn (1:200, Abcam ab93876, USA). Then, bone sections were stained with FITC-conjugated anti-mouse IgG (1:100, Proteintech SA00003-1, USA) or CY3-conjugated anti-rabbit IgG (1:100, Proteintech SA00009-2, USA). Nuclei were stained with DAPI. Images were acquired under a fluorescence microscope (Eclipse E100, Nikon, Japan).
+ Open protocol
+ Expand
3

Quantifying Spinal Cord Motor Neurons

Check if the same lab product or an alternative is used in the 5 most similar protocols
We used Nissl staining to identify spinal cord motor neurons. A decrease in the number of Nissl bodies and abnormal motor neuron morphology indicated that nerve cells may be damaged. Paraffin sections of the lumbosacral enlargements of the spinal cord were deparaffinized and rehydrated, and the sections were stained with toluidine blue (Sinopharm Chemical Reagent Co., Ltd., Shanghai, China) for 5 minutes, washed with water, and differentiated with 1% glacial acetic acid (Sinopharm Chemical Reagent Co., Ltd.). The reaction was terminated with tap water. The degree of stain differentiation was controlled by observation under an upright microscope (ECLIPSE E100, Nikon). After washing with water, the sections were dried in an oven (Sinopharm Chemical Reagent Co. Ltd.), cleared with xylene for 5 minutes, and mounted with neutral gum (Sinopharm Chemical Reagent Co., Ltd.). Serial coronal slides of the paraffin-embedded lumbosacral enlargements of the spinal cord were obtained and analyzed at intervals of six sections. The section thickness was 5 μm. The slides were scanned using an upright microscope (ECLIPSE E100, Nikon) with a 40× objective lens. The number of motor neurons in the lateral nucleus of the anterior horn of the spinal cord was manually calculated in three non-overlapping areas (220 × 350 μm2).
+ Open protocol
+ Expand
4

Luxol Fast Blue Staining for Nerve Myelin

Check if the same lab product or an alternative is used in the 5 most similar protocols
To show the morphological structures and pathological changes of the nerve myelin sheaths, luxol fast blue (LFB) staining was performed. The rats were anesthetized as above. Then, the tibial nerve was removed, fixed for 48 hours, and embedded in paraffin; paraffin sections were then cut with a microtome (RM 2016, Leica Instruments Ltd., Wetzlar, Germany). After deparaffinization, the sections were placed into LFB staining solution (Wuhan Servicebio Technology Co., Ltd., Wuhan, China) and stained overnight at 60°C in the dark for 12 hours. Then sections were rinsed in 95% alcohol to remove excess stain and rinsed three times in distilled water. The sections were differentiated in 0.05% lithium carbonate aqueous solution (Wuhan Servicebio Technology Co., Ltd.) for 15 seconds and then in 70% ethyl alcohol for another 30 seconds. The sections were dehydrated, cleared, mounted with neutral resin, and observed with an upright light microscope (ECLIPSE E100, Nikon, Tokyo, Japan). Serial transverse slides of the paraffin-embedded nerve tissue were obtained and analyzed at intervals of six sections. The slides were scanned using an upright microscope (ECLIPSE E100, Nikon) with a 40× objective lens. The number of axons was manually calculated in three non-overlapping areas (100 × 100 μm2).
+ Open protocol
+ Expand
5

ATP, Mitochondrial Potential, and ROS Assay

Check if the same lab product or an alternative is used in the 5 most similar protocols
ATP content was determined using the Enhanced ATP Assay Kit. Lysed cells or tissues were centrifuged at 12,000×g for 10 min, and the supernatant was collected. FLS were lysed with 200 μL of ATP-lysate reagent and centrifuged at 12,000×g for 10 min. Subsequently, 20 μL of the supernatant was transferred into a 96-well black lightproof plate, and then 100 μL of ATP detection reagent was added to each well for 5 min. The chemiluminescence of each well was monitored on a microplate spectrophotometer (Envision, PerkinElmer, Waltham, MA) in luminance mode within 30 min.
The ΔΨm was measured using Rhodamine 123. FLS were rinsed with PBS twice, and 2 mL of Rhodamine 123 solution (5 μm) was added to each well and dyed at 37 °C for 20 min in the dark. The staining solution was discarded, and the FLS were washed 3 times with D-Hanks. The change in ΔΨm was observed under a Nikon Eclipse E100 (Nikon, Japan), and the fluorescence intensity reflected the level of ΔΨm.
ROS levels were detected using 2′,7′-dichlorofluorescein diacetate according to the manufacturer's protocol. ROS working solution (10 μm) was added to FLS and incubated at 37 °C for 15 min in the dark. Then, the cells were washed with D-Hanks twice and photographed under a Nikon Eclipse E100 (Nikon, Japan). The average fluorescence intensity of the cells was analyzed using Image-Pro Plus software (Media Cybernetics Inc.).
+ Open protocol
+ Expand
6

Histological Staining and Immunohistochemistry Protocols

Check if the same lab product or an alternative is used in the 5 most similar protocols
For hematoxylin and eosin (H&E) staining (G1005, Servicebio), tissues were fixed by 10% neutral formalin for 1 day, dehydrated and embedded in paraffin, and then cut into 5-µm-thick sections. After being dewaxed and treated with gradient alcohol, the sections were stained with hematoxylin for 5 min at room temperature and were washed with running water. Subsequently, alcohol solution with 1% hydrochloric acid and ammonia was employed. Subsequently, 1% eosin was utilized for further staining for 3 min at room temperature, gradient ethanol for section dehydration, and neutral balsam for section mounting, followed by microscope visualization (Nikon Eclipse E100; Nikon Corporation).
For IHC, the specimens were cut into sections (5-µm-thick). All tissue samples were fixed with 10% neutral formalin and embedded in paraffin. Paraffin sections were dewaxed and the endogenous peroxides quenched with 0.3% hydrogen peroxide. They were then incubated with anti-ENC1 antibody (1:200, ab124902; Abcam) overnight (at 4°C) and secondary antibody (1:200, 7074S; Cell Signaling Technology, Inc.) for 30 min (at 37°C). The sections were stained with diaminobenzidine (G1212; Servicebio). Images were collected under a microscope (Nikon Eclipse E100; Nikon Corporation).
+ Open protocol
+ Expand
7

Histological Analysis of Renal Fibrosis

Check if the same lab product or an alternative is used in the 5 most similar protocols
Renal fibrosis was assessed via Masson staining. Dewaxed slices were soaked in Masson dye solution (Servicebio, G1006, Wuhan, China) according to the manufacturer's instructions and then observed under a microscope (Nikon Eclipse E100, Nikon, Japan), and images were acquired and analyzed (Nikon DS-U3, Nikon, Japan). Collagen fibers were stained blue, while muscle fibers, cellulose, and red blood cells were stained red. The fibrotic area (%) identified via Masson staining was analyzed using ImageJ.
The morphology of the spleen and kidneys was observed via HE staining. Dewaxed slices were stained with an HE dye solution set obtained from Servicebio (Servicebio, G1003, Wuhan, China) following the standard steps. The stained spleens and kidneys were observed under a microscope (Nikon Eclipse E100, NIKON, Japan), and images were acquired and analyzed (Nikon DS-U3, NIKON, Japan). The nuclei were stained blue, and the cytoplasm was stained red.
+ Open protocol
+ Expand
8

Histological Analysis of WT and ptsd1 Mutant

Check if the same lab product or an alternative is used in the 5 most similar protocols
The young spikes of WT and mutant ptsd1 were fixed in FAA solution (5 mL of formalin, 5 mL of acetic acid and 90 mL of 70% ethyl alcohol). The samples were dehydrated, embedded in paraffin and sectioned with a rotary microtome as described by Geng et al. [70 (link)]. The cell morphology was observed after the tissues were stained with saffron and solid green (G1031, Servicebio, Wuhan, China). The distributions of starch and protein were observed after the tissues were stained with Periodic Acid-Schiff and Naphthol Yellow S (G1068, Servicebio, Wuhan, China). Photos were taken with a camera (Nikon Eclipse E100, Tokyo, Japan) and analyzed with CaseViewer software.
+ Open protocol
+ Expand
9

Embedding, Staining, and Imaging Brain Tissue

Check if the same lab product or an alternative is used in the 5 most similar protocols
Brain tissues were embedded in paraffin and sectioned. Then sections were processed as follows: Xylene for 20 min, two times; 100% ethanol for 5 min, two times; 75% ethanol for 5 min; and tap water rinsing. Sections were subjected to hematoxylin–eosin (HE) and toluidine blue (Nissl) staining. Hematoxylin–Eosin Staining Kit (G1003; Wuhan Servicebio Technology Co., Ltd., Wuhan, China) was used for HE staining, and Toluidine blue staining solution (G1032; Wuhan Servicebio Technology Co., Ltd.) was used for Nissl staining. Sections were finally sealed with neutral gum and examined under an upright optical microscope (NIKON ECLIPSE E100) for image acquisition.
+ Open protocol
+ Expand
10

Histological Analysis of Scapular Brown Adipose Tissue

Check if the same lab product or an alternative is used in the 5 most similar protocols
After removal, scapular BAT (about 3 x 3 x 3 mm3) of sixteen animals (n = 4 per group) was immediately washed with PBS solution twice and stored in paraformaldehyde. 24 h later, the BAT was washed, dehydrated in graded alcohol concentrations, cleared in xylol and embedded in paraffin. The paraffin blocks were cut serially to provide 5 μm-thick sections. Serial sectioning was performed until reaching the maximum number of sections possible. Sections representative of each specimen were selected and stained with hematoxylin-eosin dyestuff. The stained slice was dehydrated with pure alcohol and made transparent using xylene. The transparent slice was then placed onto a slide and sealed with a coverslip. Images were captured using a microscope (ECLIPSE E100, NIKON, Japan) coupled to a video camera (K-Viewer 1.5.5.10 x64, KFBIO, China). Ten slices were randomly selected from each animal for the histometric analysis, and one image representative of its respective group was selected to present in this paper.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!