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18 protocols using mab5374

1

Immunoprecipitation of Huntingtin Protein

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Flies were processed for IP 7 days post-eclosion. Briefly, heads were separated using standard procedures, and protein extracts prepared by vigorous homogenization with a tissue grinder followed by liquid nitrogen freeze and thaw cycles. 750 μg of protein were used for IP, as we previously described63 (link). 10 μl per IP of anti Htt antibody was used (Millipore, MAB5374). IP and whole protein lysate (WPL) were probed using anti AGEs (Cosmobio, KAL-KH-001, 1:500); anti-Htt (Millipore, MAB5374, 1:1000) and anti α-tubulin (Sigma, T5168, 1:15000).
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2

Immunostaining of Mouse Brain Proteins

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Mouse brains were fixed in 4% paraformaldehyde for 16 h, embedded in paraffin, and sectioned at a thickness of 5 μ5. The sections were de-paraffinized in xylene and re-hydrated, followed by antigen retrieval by microwaving in 0.01 M citrate buffer (pH 6.0) at 120 °C for 15 min. After permeation with PBS containing 0.5% Triton X-100, the sections were incubated with blocking solution (10% normal donkey serum in PBS) for 60 min at room temperature, following by incubation for 24 hours at 25 °C with mouse anti-Htt (1:100, MAB5374, Sigma Aldrich), mouse anti-Atxn1 (1:100, MAB5374, Sigma Aldrich), mouse anti-fibrillarin (1:100, #ab4566, Abcam), rabbit anti-nol10 (1:5000, #ab181161, Abcam), and mouse anti-nucleolin (1:5000, #ab13541, Abcam) primary antibodies. After washing three times in PBS at room temperature, the sections were incubated at room temperature for 1 h with Alexa Fluor 488-conjugated anti-rabbit IgG (1:1000, A21206, Molecular Probes) and Alexa Fluor 555-conjugated anti-mouse IgG (1:1000, #A31570, Molecular Probes) secondary antibodies.
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3

Quantifying Huntingtin Aggregates in MSNs

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Medium spiny neuron (MSN) specific mutant HTT aggregates were assessed using a multiplexed immunofluorescence approach staining for HTT protein (EM48 antibody, cat.# MAB5374, Millipore-Sigma) and anti-DARPP-32 (19A3 antibody, cat.# 2306S, New England Biolabs - expressed almost exclusively by striatal medium spiny neurons), as described140 (link). After rehydration, slides were subjected to antigen retrieval in 10 mM sodium citrate for 20 min in a steamer and cooled to room temperature for 1 h. Slides were washed twice in 1x PBS + 0.05% Tween-20 (1x PBST) (2 min, 2 times). Slides were blocked in 10% normal goat serum for 1 h at room temperature and incubated with primary antibody overnight at 4 °C. Secondary antibody incubation was performed for 1 h at room temperature. Slides were mounted with Hardset VectaShield with DAPI. Aggregates were then blindly assessed in two ways:
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4

Quantifying Huntingtin Aggregates in MSNs

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Medium spiny neuron (MSN) specific mutant HTT aggregates were assessed using a multiplexed immunofluorescence approach staining for HTT protein (EM48 antibody, cat.# MAB5374, Millipore-Sigma) and anti-DARPP-32 (19A3 antibody, cat.# 2306S, New England Biolabs - expressed almost exclusively by striatal medium spiny neurons), as described140 (link). After rehydration, slides were subjected to antigen retrieval in 10 mM sodium citrate for 20 min in a steamer and cooled to room temperature for 1 h. Slides were washed twice in 1x PBS + 0.05% Tween-20 (1x PBST) (2 min, 2 times). Slides were blocked in 10% normal goat serum for 1 h at room temperature and incubated with primary antibody overnight at 4 °C. Secondary antibody incubation was performed for 1 h at room temperature. Slides were mounted with Hardset VectaShield with DAPI. Aggregates were then blindly assessed in two ways:
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5

Immunodetection of Mutant Huntingtin in Mice

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Freshly washed platelets from nine-month-old zQ175 mice were pelleted at 1300×g for five min and prepared as previously described28 (link) using the mouse anti-mHtt (1:500, Millipore Sigma: mab5374). Control conditions in which the primary antibody was omitted were further performed. The regions of interest were cut and glued onto a resin block. Ultrathin sections of ~70 nm were obtained with a Leica UC7 ultramicrotome and collected on mesh grids. Imaging was performed with a FEI Tecnai Spirit G2 transmission electron microscope at 80 kV.
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6

Immunohistochemical Analysis of Nme1 KD/OX

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For Nme1 KD studies, tissue samples were prepared
for immunofluorescence by transcardial perfusion followed by tissue
processing and staining as previously described (Heiman et al., 2008 (link)). Serial 20μm-thick
sections through the striatum covering the entire injection site were
co-stained with a GFP antibody (Ab6556, 1:500, Abcam, Cambridge MA), and
either the EM48 antibody (MAB5374, 1:100, Millipore Sigma, St. Louis, MO)
for visualizing mHTT aggregates, or else a NeuN antibody (MAB377, 1:100,
Millipore Sigma, St. Louis, MO) for visualizing neuronal nuclei. Every
6th section through the striatum was sampled at 3 fields per
hemisphere in the GFP-positive injection site using 40x Z-stacks of
6μm in depth by an investigator blinded to genotype. For
Nme1 OX studies, fresh frozen brains were sectioned
sagittally across the entire injection site in 10uM thick sections through
the striatum and co-stained as described above. Image analysis was completed
using FIJI (Schindelin et al.,
2012
).
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7

Western Blotting and Immunostaining Protocol

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For western blotting, primary antibodies against Lamp2b (rat; Developmental Studies Hybridoma Bank ABL-93; AB-2134767; 1:1000), CD9 (rabbit; Abcam ab92726; 1:1000), Calnexin (rabbit; StressGen ADI-SPA-860; 1:2000), GFP (mouse; Clontech 632381; 1:5000), mRFP/mCherry (rabbit; Abcam ab167453; 1:500) and DNAJB6 (rabbit; housemade; 1:2000) were used. Odyssey secondary anti-mouse, -rabbit and -rat antibodies (Li-COR, LI 926-68070, LI 926-32211 and LI 926-32219) were used at 1:5000 dilution. For immunocytochemistry, CD9 (1:100) was used followed by staining with secondary antibodies conjugated with Alexa 546 (goat; Invitrogen A-11010; 1:500). Antibodies for immunohistochemistry included EM48 (mouse; Millipore MAB5374; 1:200) and anti-mouse conjugated with biotin (horse; Vector BA9200; 1:300).
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8

Quantifying Engrafted Human Cells

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Animals were killed using sodium pentobarbital and perfused transcardially with saline followed by 4% paraformaldehyde, and their brains were processed for immunocytochemistry as previously described. Sagittal equidistant cryosections of sections (20 μm) spanning the whole brain were analysed. Human cells were identified through immunostaining with anti-human nuclear antigen (1:800, MAB1281, Millipore, Temecula, CA, USA). Engrafted human cells were mapped using Metamorph imaging software and an automated fluorescence microscope (Leica Microsystems, Wetzlar, Germany). Brain sections were then co-stained to define phenotype, using combinations of the following antibodies: mouse anti-huntingtin antibody clone EM48 (1:250, MAB5374, Millipore); mouse anti-glial fibrillary acidic protein (GFAP) (1:800, SMI-21, Covance, Princeton, NJ, USA); rabbit anti-Olig2 (1:400, RA25081 Neuromics, Edina, MN, USA); rabbit anti-PDGFRα (1:400, 5241 Cell Signaling Technology, Danvers, MA, USA). Slides were analysed serially every twenty-fourth section using the optical fractionator method to estimate the total number of engrafted human cells of each histological marker (GFAP, Olig2, PDGFRα) using StereoInvestigator imaging software (MicroBrightField, Burlington, VT, USA).
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9

Immunohistochemical Analysis of Huntington's Disease

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Coronal brain sections of 50 μm thickness were cut with an electronic microtome (Microm HM 650 V). The slides from bregma −0.60 to bregma −0.80 mm were used for Hematoxylin/eosin staining and immunostained with monoclonal antibody anti-Huntingtin (MAB5374 – Millipore – 1:1000) or polyclonal anti-GFAP (AB5804 – Millipore – 1:1000 [33 (link)]). For each animal, systematic pictures were taken with the slide scanner Hamamatsu nanozoomer. The areas of lateral ventricles and cortex thickness were measured with NDP software (Nanozoomer Digital Pathology Virtual SlideViewer). Quantifications of aggregates number and size, or GFAP signal, were scored with ImageJ software from 256 μm × 256 μm images. Representative pictures for these immunostainings obtained with the confocal laser scanning microscope model LSM780 (Carl Zeiss) are shown.
TAMRA-P42-TAT injected mice were also immunostained with rabbit monoclonal anti-DARPP32 (MAb2306 - Cell Signaling Technology - 1: 1600), secondary detected by Alexa 488 anti-rabbit (1: 2000) to label the striatum, and with mouse monoclonal anti-NeuN (MAB377 – Millipore - 1: 1000), secondary detected by Dye light blue anti-mouse (1: 500), as a neuronal marker.
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10

Immunohistochemical Staining of Protein Targets

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Tissue sections from all animals were rinsed in Tris-buffered saline (TBS) with 0.05% Triton X-100 before being blocked in TBS solution containing 10% normal goat serum (Gibco). Sections were incubated in an em48 (Millipore, MAB 5374, 1:500) or 1–82 aa/2B4 (MAB 5392, 1:500) primary antibody solution overnight. Sections were washed and incubated in a goat anti-mouse biotinylated secondary antibody solution for 1 hr (Vector Labs, BA-9200, 1:500). Tissue was rinsed and the signal was developed using a standard Vectastain ABC kit (Vector Laboratories, PK6100) for 1 hr before developed in 3,3′-diaminobenzidene (DAB) with nickel (II) sulfate (0.05% DAB, 2.5% nickel (II) sulfate hexahydrate, 0.02% H2O2, Tris-buffered saline).
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