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118 protocols using sabouraud dextrose agar

1

Dermatophytes Procurement and Maintenance

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The following dermatophytes were procured from MTCC, Institute of Microbial Technology (IMTECH), Chandigarh.

Epidermophyton floccosum var. nigricans (MTCC 613)

Microsporum canis (MTCC 2820)

Microsporum gypseum (MTCC 2819)

Trichophyton rubrum (MTCC 296)

Cultures of M. gypseum and M. canis were maintained in Sabouraud dextrose agar and E. floccosum and T. rubrum in Emmons modification of Sabouraud dextrose agar (HiMedia). The purity of standard cultures was tested by examining the morphology of macroconidia and shape and disposition of microconidia by lactophenol cotton blue staining and by macroscopic appearance and pigmentation of the colony on Sabouraud dextrose agar.[10 ]
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2

Antifungal Activity of Copper(II) Complexes

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To evaluate the antifungal activity of the copper(II) complexes, 21 clinical isolates of Candida species collected from different body parts were obtained from the collection of the Laboratory of Applied Microbiology, Universidade Federal da Grande Dourados, Brazil. The isolates were identified as C. albicans (ten isolates), C. glabrata (six isolates), C. krusei (one isolate), C. parapsilosis (three isolates), and C. tropicalis (one isolate).
All species were stored at −20 ± 2 °C in Sabouraud Dextrose Broth (SDB, HiMedia Laboratories, Mumbai, India) with 20% (v/v) glycerol. Prior to each assay, species were subcultured from the frozen stock suspension onto Sabouraud Dextrose Agar (SDA, HiMedia) plates. The plates were incubated overnight at 35 °C. A pool of growing colonies was subcultured in CHROMagar Candida® (Difco, Tlalnepantla, Estado de Mexico, Mexico) to investigate the purity of the culture and color of the colony. Yeasts that grew in the differential selective medium were identified according to conventional methodology [43 ].
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3

Isolation and Culturing of Fungal Isolates

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To retrieve a local isolate, a loopful of spores was scraped from moldy bread and cultured on potato dextrose agar (PDA). The PDA contained potato extract (4.0 g) (fresh, unpeeled potatoes), glucose (20 g) (Merck KGaA, Darmstadt, Germany), and agar (20 g) (Oxoid, Basingstoke, UK) in distilled water (1000 mL) [11 (link)]. The agar was dissolved by boiling the mixture, followed by sterilization before pouring it onto plates. Sabouraud dextrose agar (SDA) (HiMedia, Mumbai, India) was also used for the parallel culturing of the isolate. Both media were incubated for five to seven days at 25 ± 2 °C [12 (link)]. Then, a cork borer was used to inoculate a fungal disk on Aspergillus differentiation agar. This agar was prepared by adding 10 g of yeast extract (HiMedia, Thane, India), 15 g of tryptone (HiMedia), 0.5 g of ferric citrate (Merck KGaA), and 15 g of agar (Oxoid) to distilled water (1000 mL). The media were boiled and autoclaved, and the inoculated plates were incubated for five to seven days at 25 ± 2 °C [13 (link)].
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4

Isolation and Characterization of Candida albicans from Endodontic and Oral Samples

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In the laboratory, the tube containing the sample in 0.3 ml of BHI broth was cultured aerobically on Sabouraud dextrose agar (SDA) (Himedia, India) at 37 °C for 48 h, and the resultant growth, if any, was harvested and pure colonies obtained after subculture for 24 h on Sabouraud agar were then stored in 20% glycerol.
A total of four endodontic isolates of C. albicans from another geographical region (Finland) were used for comparative purposes. These were archival strains kindly donated by Dr. TMT Waltimo to the Oral and Biosciences Laboratory, Faculty of Dentistry, Hong Kong University, Hong Kong) [18 (link)]. These isolates were obtained from subjects with primary endodontic infection who were systemically healthy.
Saliva samples from healthy subjects in the UAE were collected randomly to isolate C. albicans for use as reference, control strains of non-endodontic origin, from the oral commensals. For this purpose, saliva from each volunteer was collected by expectoration into a 10 mL container, and cultured in the laboratory as described above, to obtain pure samples, and stored until use in the experiments. The salivary samples were processed following a protocol of Samaranayake et al. [19 (link)].
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5

Cultivation of Candida albicans ATCC 90028

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The strain C. albicans ATCC 90028 was used in the present study. The test culture was maintained in Sabouraud dextrose agar (SDA; Himedia, Mumbai) and cultured routinely in YEPD (Yeast extract peptone dextrose) broth. For experimental analysis, a loopful of culture was used to inoculate YEPD medium and incubated at 37°C overnight. Prior to each bioassay, the overnight culture was adjusted to 0.8 OD at 600 nm (108 CFU/ml). Spider broth (1% mannitol, 0.2% dipotassium hydrogen phosphate, and 1% nutrient broth) was used in the biofilm assay for augmenting hyphal formation (Muthamil and Pandian, 2016 (link)).
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6

Propolis-based Antifungal and Immunomodulatory Formulation

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Propolis powder was kindly provided by Bee Product Industry Co., Ltd., Lamphun, Thailand. Sorbitan monostearate (Span 60; SP60), polysorbate 80 (Tween 80; TW80), and cholesterol (CHOL) were purchased from Sigma-Aldrich (St. Louis, MO, USA). All other chemicals and reagents used in this study were of analytical grade, including Sabouraud Dextrose Agar (SDA) (HiMedia, Mumbai, India), Sabouraud Dextrose Broth (SDB) (HiMedia, Mumbai, India), Dulbecco’s modified Eagle’s medium (DMEM) (Gibco, Carlsbad, CA, USA), Kaighn’s modification of Ham’s F12 medium (F-12K) (Caisson laboratories Inc., Smithfield, UT, USA), Chloroform (RCI Labscan, Taipei, Taiwan), Potassium phosphotungstic acid (TED PELLA Inc., Redding, CA, USA), 3-[4,5-dimethylthiazol-2-yl]-2,5 diphenyltetrazolium bromide (MTT) (Bio Basic Inc., Markham, ON, Canada), Calcofluor white (CFW) (Sigma-Aldrich, St. Louis, MO, USA), Nile-red dye (Sigma-Aldrich, St. Louis, MO, USA), ProLong Gold anti-fade reagent (Thermo Fisher Scientific, Waltham, MA, USA), Egg Yolk Tellurite Emulsion (HiMedia, Mumbai, India), FUN-1 (Molecular Probe, Waltham, MA, USA), Concanavalin A (Con A)-Alexa Flour 488 conjugate (Thermo Fisher Scientific, CA, USA), lipopolysaccharide (LPS) (Sigma-Aldrich, MO, USA), and interferon-γ (IFN-γ) (Biolegend, San Diego, CA, USA).
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7

Fungal Identification in Clinical Samples

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Step 1: The sampled material was divided into two portions: One for direct microscopy and the remainder for culture. Direct microscopy of all specimens was done with the help of 20% potassium hydroxide (KOH) solution to determine the presence of any fungal elements such as fungal hyphae, arthrospore, or yeast forms

Step 2: All samples were inoculated on each of two isolation media: (1) Sabouraud dextrose agar (SDA, HiMedia Laboratories) with 5% chloramphenicol and (2) SDA with 5% chloramphenicol and cycloheximide. The culture tubes were incubated at 25°C and 37°C and examined biweekly for 6 weeks

Step 3: The pathogenic organisms were identified by [Figure 1] gross morphology and microscopic examination with KOH and lactophenol cotton blue preparation [Figure 2]. If a dermatophyte was isolated in culture, it was taken as a pathogen. If a nondermatophytic mold or yeast was isolated, it was considered to be significant. If they were isolated repeatedly in pure culture (three times) on two media and with a positive KOH finding. To identify Candida albicans, we did germ tube test and Corn Meal Agar inoculation. We also did urease test to differentiate Trichophyton species.

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8

Fungal Strain Detection in COVID-19

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To detect fungal strains, all clinical samples obtained from confirmed COVID-19 patients (blood, urine, tracheal aspirate) were cultured on Sabouraud Dextrose Agar (SDA, HiMedia, India), and HiCrome Candida Differential Agar (HiMedia,India) in the Department of Microbiology of Abu-Ali Sina Medical Center.
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9

Mycotoxin Detection Protocol

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Sabouraud dextrose agar (SDA), Sabouraud dextrose broth (SDB), and peptone were obtained from HiMedia (Mumbai, India). Certified standards of DON and ZEA were obtained from Sigma-Aldrich (Bengaluru, India). Immunoaffinity columns specific for DON and ZEA were procured from Vicam (Waters business, USA). The other chemicals used in the study were analytical grade and obtained from Merck Millipore (Bengaluru, India).
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10

Synthesis and Characterization of MOFs

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Copper nitrate trihydrate (99.5%, Lobal Chemie), trimesic acid (95%, Sigma-Aldrich), N,N-dimethylformamide (DMF; 99.8%, QRec), ethanol (99.9%, QRec), Sabouraud Dextrose Agar (SDA; Himedia), Sabouraud Dextrose Broth (SDB; Himedia) and Potato Dextrose Agar (PDA; Himedia) were of analytical reagent grade. All chemical compounds were diluted with deionized water (greater than 18 MΩ cm, Millipore).
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