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Mirna first strand cdna synthesis

Manufactured by Sangon
Sourced in China, Japan

The MiRNA First Strand cDNA Synthesis is a laboratory equipment used for reverse transcription of miRNA into complementary DNA (cDNA). It provides a reliable and efficient method for generating cDNA from small RNA samples, which can then be used for further analysis and downstream applications.

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49 protocols using mirna first strand cdna synthesis

1

Comprehensive RNA extraction and qRT-PCR analysis

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Total RNA from cells and tissues were extracted using Trizol reagent (Invitrogen, USA) following the manufacturer’s instructions. For lncRNAs and mRNAs, Transcriptor First Strand cDNA synthesis Kit (Roche, 0489703000) was applied for reverse transcriptions. qRT-PCR was performed using FastStart Universal SYBR Green Master (Rox) (Roche, 4913850001) on the instrument of ABI 7500 (Thermo, USA). For miRNAs, SanPrep Column miRNA Extraction Kit(Sangon Biotech, B518811), miRNA First Strand cDNA Synthesis (Sangon Biotech, B532453) and miRNA qPCR Kit (Sangon Biotech, B532461) were adopted. Relative gene expressions were determined using the 2–ΔΔCT method. The primers were described in Table 1.

Primer sequences used for qRT-PCR

GenePrimerSequence (5′-3′)
GADPHForwardGCATCCTGGGCTACACTG
ReverseTGGTCGTTGAGGGCAAT
U6ForwardCGCTTCGGCAGCACATATACTAAAATTGGAAC
ReverseGCTTCACGAATTTGCGTGTCATCCTTGC
RT PrimerAAAATATGGAACGCTTCACG
lncRNA XISTForwardAGCAGGTCAGGCAGAGGAAGTC
ReverseCCCGATACAACAATCACGCAAAGC
TNFSF10ForwardTTACCAACGAGCTGAAGCAGATGC
ReverseGCTGACGGAGTTGCCACTTGAC
miR-129-5pForwardTGCGCTTTTTGCGGTCTGG
ReverseAGTGCAGGGTCCGAGGTATT
RT PrimerGTCGTATCCAGTGCAGGGTCCGAGGTATTCGCACTGGATACGACGCAAGC
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2

RNA Extraction and RT-qPCR Analysis

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Total RNA was extracted utilizing TRIzol reagents (15596026, Invitrogen, Carlsbad, CA, USA), and 1 µg of which was used for RT. For miRNA detection, total RNA was reverse-transcribed into complementary DNA (cDNA) employing miRNA First Strand cDNA Synthesis (Tailing Reaction) kit (B532451-0020, Sangon Biotechnology Co. Ltd., Shanghai, China). For mRNA, RT was started with reference to the manual of cDNA RT kit (K1622, Reanta Co., Ltd., Beijing, China). RT-qPCR was operated on the synthesized cDNA using Fast SYBR Green PCR kit (Applied Biosystems, Foster City, CA, USA) in ABI 7500 RT-qPCR system (Applied Biosystems). Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) or U6 functioned as normalizer and the relative expression of genes was analyzed by the 2−ΔΔCt method. Primer sequences are displayed in Additional file 5: Table S1.
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3

MiRNA Expression Analysis in FLS

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MiRNA from FLS was extracted according to the instructions of miRcute miRNA Isolation Kit (TIANGEN, Beijing) and reversely transcribed with the miRNA first strand cDNA synthesis (Sangon Biotech, Shanghai). The expression levels of Mir204 and Mir211 were detected, respectively, by quantitative PCR with the miRNA fluorescence quantitative PCR kit (Sangon Biotech, Shanghai). The expressions of U6 were used as internal reference, and the experiment was repeated at least three times (Table 1).
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4

RNA Isolation, cDNA Synthesis, and Real-Time qPCR

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Total RNA from tissues or cells was isolated using an RNA isolation kit (QIAGEN, Qiagen GmbH, Hilden, Germany). mRNA wasreverse‐transcribed to cDNA using a PrimeScript RT reagent Kit (RR047A, Takara Holdings Inc., Kyoto, Japan), whereas miRNA was reverse‐transcribed to cDNA with a miRNA First Strand cDNA Synthesis (Tailing Reaction) kit (B532451‐0020, Sangon Biotech Co., Ltd., Shanghai, China). Next, real‐time qPCR was conducted using a Fast SYBR Green PCR (Applied Biosystems, Foster, CA, USA) on an ABI 7500 real‐time PCR System (Applied Biosystems, Inc., Carlsbad, CA, USA). The primers are listed in Table 1, in which glyceraldehyde‐3‐phosphate dehydrogenase (GAPDH) and U6 were used as the endogenous controls. Relative gene expression was evaluated using the 2–ΔΔCt method.
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5

Quantification of mRNA and miRNA Levels

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Total RNA was obtained from MC3T3-E1 using Trizol (Takara). The M-MuLV First Strand cDNA Synthesis Kit and miRNA first Strand cDNA Synthesis (Sangon Biotech) was applied to produce cDNA. The 2 × SG Fast qPCR Master Mix was used to detect relative mRNA or miRNA levels on a system following the manufacturer. Quantified by the 2-ΔΔCt method. Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) and U6 were applied as controls. All sequences of primers were presented in Table 1.
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6

Quantifying miRNA Expression in Mouse Embryos

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An miRNeasy Mini Kit (Qiagen) was used to extract total RNA, containing miRNA, from mouse embryos or mouse neural stem cells (C17.2). Extracted RNA was reverse‐transcribed using a miRNA First Strand cDNA Synthesis (Sangon). qRT‐PCR was performed as follows: pre‐denaturation at 95°C for 5 minutes; followed by 45 cycles of 95°C for 15 s and 60°C for 45 s using a SYBR Premix Ex Taq kit (Takara) on a 7500 Real‐time PCR system (ABI). The relative expression of miRNAs and cDNA was quantified using the 2−ΔΔCt method.
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7

Profiling miR-133a and PFKFB3 in Cells

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Total RNA was isolated from cells using TRIzol kit (Life Technologies, USA). The cDNA was synthesized using PrimeScript™ RT Master Mix Kit for qPCR (TaKaRa, Japan) and miRNA First Strand cDNA Synthesis (Sangon Biotech, China) according to relevant protocols. miR-133a-3p, PFKFB3, KI67 and MMP9 mRNA levels were quanti ed using Power SYBR™ Green PCR Master (Invitrogen, USA) with StepOne Plus Realtime PCR system. U6 and Actin were used as an internal standard control for miRNA and mRNA detection, respectively. Primer sequences used in qRT-PCR were listed in Table 1. The relative expression of miR-133a-3p and PFKFB3 mRNA was presented by 2 -ΔΔCt method. The experiment was repeated for three times.
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8

Reverse Transcription and qPCR Analysis

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After the cells were rinsed with PBS at 4°C, total mRNA was extracted using Trizol® reagent and reverse transcribed into cDNA by PrimeScriptTM RT reagent Kit (RR037A). For miRNAs analysis, miRNA were reverse transcribed to cDNAs using the miRNA First-Strand cDNA Synthesis (Sangon, China) with the Stem-loop Method by primers (Supplementary Table 2). RT- qPCR was performed using SYBR® Primix Ex TaqTM by primers (Supplementary Table 3). U6 small nuclear RNA and GAPDH was used as an endogenous control for miRNA and mRNA. Relative differences in the PCR product amounts were evaluated by using the 2–ΔΔCT method.
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9

Quantification of miRNA-203 Expression

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Total RNA was extracted with TRIzol Reagent (Cat. No: 15596018; Invitrogen, Thermo Fisher Scientific, Wilmington, DE, USA), and its purity was determined using the NanoDrop spectrophotometer (ND-2000; Thermo Fisher Scientific, Waltham, MA, USA). The RNA samples with high purity were reversely transcribed into complementary DNAs (cDNAs) using the TAKARA PrimeScript™ RT reagent kit with gDNA Eraser (Perfect Real Time) (Cat. No: RR047A; Takara, Dalian, China) according to the manufacturer's instruction. In order to determine miRNA-203 expression, the microRNAs were purified using the SanPrep Column microRNA Extraction Kit (Cat. No: B518811; Sangon Biotech (Shanghai) Co., Ltd., China) and the first-strand cDNA synthesis was carried out using miRNA First-Strand cDNA Synthesis (Tailing Reaction) (Cat. No: B532451; Sangon Biotech (Shanghai) Co., Ltd., China) according to the manufacturer's protocol. PCR amplification was carried out in a 20 μL reaction system, which contained 2 μL cDNA, 10 μL SYBR Premix Ex Taq II (TaKaRa, Otsu, Shiga, Japan), and 10 μM of both sense and antisense primers. The expressions were calculated using the 2−ΔΔCT method. Experiments were performed in triplicate. Primers used here are presented in Table 1.
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10

Quantitative Analysis of mRNA and miRNA

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Total RNA was extracted by Trizol reagent. mRNA and miRNA were reverse transcribed with the PrimeScript™RT reagent Kit with gDNA Eraser and miRNA first strand cDNA synthesis (Sangon Biotech, Shanghai, China) respectively. The primer sequences were designed and synthetized (Table 2). Quantitative real-time PCR (qRT-PCR) was conducted with SYBR Premix Ex Taq™ II. Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) or U6 was used to respectively normalize the mRNA expression or miRNA expression. The data were compared to normalized control values.
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