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16 protocols using goat anti human igg pe

1

Immunophenotyping of CX3CL1 Binding

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The isotype controls MOPC21 (mIgG1), and C1.18.4 (mIgG2a) were purchased from BioXcell. Isotype mIgG2c, Goat anti-mouse IgG-PE, goat anti-human IgG-PE (Southern Biotech Cat# 2040-09, RRID : AB_2795648), and goat anti-human IgG-Alexa647 (multi species adsorbed) (Southern Biotech Cat# 2040-31, RRID : AB_2795651) were purchased from Southern Biotech. CX3CL1-human IgG1 Fc fusion protein for blocking assays was a kind gift from Dr. Ulrich von Andrian, Harvard Medical School. CX3CL1 recombinant protein was purchased from Novus Biologicals (cat NBP2-35038).
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2

Plasma Antibody Profiling for SARS-CoV-2

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Optimization experiments declared the optimal concentration of the plasma for studying the humoral response following SARS-CoV-2 infection to be 10.000-fold dilution. As previously described10 (link),31 , 50 µL of a bead mixture containing all different S-proteins in a concentration of 20 beads per µL were added to 50 µL of diluted plasma and incubated overnight on a rotator at 4 °C. The next day, plates were washed with TBS containing 0.05% Tween-20 (TBST) and resuspended in 50 µL of Goat-anti-human IgG-PE (Southern Biotech) with a concentration of 1.3 µg/mL. After 2 h of incubation on a rotator at room temperature, the beads were washed with TBST and resuspended in 70 µL Magpix drive fluid (Luminex). Read-out of the plates was performed on a Magpix (Luminex). The binding of antibodies is expressed as the Median Fluorescence Intensity (MFI) of approximately 50 to 100 beads per well. MFI values are corrected for background signals by subtracting the MFI of wells containing only buffer and beads.
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3

Luminex Assay for SARS-CoV-2 Antibody Profiling

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Levels of Immunoglobulin G (IgG) binding to SARS-CoV-2 receptor-binding domain (RBD), nucleocapsid (N) and spike (S) proteins of wild-type (WT) virus (Wuhan-Hu-1; GenBank: MN908947.3) and variants of concern (VOCs; Alpha (B1.1.7), Beta (B.1.351), Gamma (P.1) and Delta (B.1.617.2)), as well as to control proteins tetanus toxoid, respiratory syncytial virus fusion glycoprotein (RSV-F) and influenza A/H1N1pdm09 virus HA protein, were determined using a custom luminex assay as described previously.33 (link) The VOCs S constructs contained the following mutations compared to the WT27 (link); (ΔH69-V70, ΔY144, N501Y, A570D, D614G, P681H, T716I, S982A, D1118H in Alpha; L18F, D80A, D215G, L242H, R246I, K417N, E484K, N501Y, D614G, A701V in Beta; L18F, T20N, P26S, D138Y, R190S, K417T, E484K, N501Y, D614G, H655Y, T1027I in Gamma; T19R, K77T, G142D, L452R, T478K, D614G, D950N in Delta). In short, proteins were produced in HEK293F cells (Invitrogen) and purified from the cell culture supernatant using affinity chromatography with NiNTA agarose beads (QIAGEN). Proteins were covalently coupled to luminex magplex beads using a two-step carbodiimide reaction. Beads were incubated overnight with 1:100,000 diluted serum followed by detection with goat-anti-human IgG-PE (Southern Biotech) on a Magpix (Luminex) as the mean fluorescent intensity (MFI).
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4

SARS-CoV-2 Antibody Quantification Assay

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Optimization experiments determined the optimal concentration of the sera for studying the humoral vaccination response to be 100.000-fold dilution. As previously described [34 (link)], 50 μL of a bead mixture containing all different spike proteins in a concentration of 20 beads per μL were added to 50 μL of diluted serum and incubated overnight on a rotator at 4°C. The next day, plates were washed with TBS containing 0.05% Tween-20 (TBST) and resuspended in 50 μL of Goat-anti-human IgG-PE (Southern Biotech). After 2 hours of incubation on a rotator at room temperature, the beads were washed with TBST and resuspended in 70 μL Magpix drive fluid (Luminex). Read-out of the plates was performed on a Magpix (Luminex). The binding of antibodies was determined as the Median Fluorescence Intensity (MFI) of approximately 50 to 100 beads per well, corrected for background signals by subtracting the MFI of wells containing only buffer and beads and converted into binding antibody units per ml (BAU/ml) using the WHO International Standard for anti-SARS-CoV-2 immunoglobulin (NIBSC 20/136). To confirm assay performance, a titration of serum of one convalescent COVID-19 patient as well as positive and negative controls were included on each plate. In addition, 15 to 20% of samples of each run were replicated to confirm the results.
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5

Multiparametric Flow Cytometry Assay

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For cell lines, goat anti-human IgG-PE was purchased from SouthernBiotech. For blood samples from mice, the following antibodies were purchased from Biolegend: anti-human CD45-APC (HI30), anti-human CD3-Percp/Cy5.5 (SK7), anti-mouse CD45-Brilliant Violet 711™ (30-F11), anti-mouse CD11b-Brilliant Violet 570™ (M1/70), and anti-mouse Ly6G-PE/Dazzle™ 594 (1A8). Cytokine amounts were measured with flow cytometry using LEGENDplex™ Human and mouse Th1 Panel (5-plex) (Biolegend) following manufacturer’s protocol. The experiments were conducted using a BD LSRFortessa flow cytometer and analyzed with FlowJo v10.
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6

Quantification of SARS-CoV-2 Antibody Levels

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Levels of Immunoglobulin G (IgG) binding to SARS-CoV-2 receptor-binding domain (RBD) and spike (S) proteins of wild type virus (Wu-1) were determined using a custom luminex assay as described previously [11] , [12] . In summary, proteins were produced in HEK293F cells (Invitrogen) and purified from the cell culture supernatant using affinity chromatography with NiNTA agarose beads (Qiagen). Proteins were covalently coupled to luminex magplex beads using a two-step carbodiimide reaction. Beads were then incubated overnight with 1:100,000 diluted serum followed by detection with goat-anti-human IgG-PE (Southern Biotech) on a Magpix (Luminex) as the mean fluorescent intensity (MFI).
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7

Quantifying Antibody Binding on Cell Surfaces

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SU-DHL-1(CRL-2955, ATCC) or HEK293T-CD25 cells were harvested and washed by FACS buffer (0.2% BSA in PBS) two times. Serially diluted antibodies were mixed with 1 × 106 cells at 4 °C for 1 h. After washing two times by FACS buffer, cells were incubated in dark with Goat Anti-Human IgG-PE (2040-09, Southern Biotech) at 4 °C for 30 min and then analyzed by NovoCyte 2060R flow cytometry. Experiments were performed in triplicate, value = mean ± SEM.
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8

Luminex-Based Antibody Detection

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Antibody levels in serum and milk were assessed using a custom Luminex assay similar to previously described (29 ). In short, viral antigens were covalently coupled to Luminex Magplex beads with a two-step carbodiimide reaction at a ratio of 37 μg protein to 12.5 million beads for RSV-F glycoprotein and equimolar amounts for other proteins. Following the outcome of optimization experiments, serum was diluted 1:10,000, and milk was diluted 1:100. Beads and diluted samples were incubated overnight, followed by detection with goat-anti-human IgG-PE or goat-anti-human IgA-PE (Southern Biotech). Read-out was performed on a Magpix (Luminex). The resulting median fluorescence intensity (MFI) values are the median of at least 50 beads per well and were corrected by subtraction of MFI values from the buffer and beads-only wells.
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9

Targeted Knockout Validation by Flow Cytometry

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Cell lines were transduced with sgRNA vectors marked by GFP. Three to four days after transduction, GFP levels were measured by flow cytometry on a BD FACS Calibur using CellQuest™ Pro version 6.0 and analyzed with FlowJo version 9. Cells were split every other day into doxycycline containing media and GFP levels were followed for 14 days and normalized to the day 0 measurement. All sgRNA and shRNA sequences are listed below. When surface proteins were targeted, knockout was validated by flow cytometry by spinning cells down, washing in FACS buffer (PBS plus 2% (vol/vol) FBS, 1mM EDTA), and stained at 4°C for 30 minutes in FACS buffer with fluorescently labeled antibodies: mouse anti-human CD19-APC (Biolegend SJ25C1, 1:500), mouse anti-human CD81-PE (Biolegend 5A6, 1:500), mouse anti-human IgM-APC (MHM-88), 1:400); or from Southern Biotech: goat anti-human IgG-PE (1:200).
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10

Multiparametric Flow Cytometry Analysis

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Anti-hCD25-PE, anti-CD69-PE, anti-hCD8-APC, anti-hCD45-PECy7, anti-hCD4-PE, anti-hCD4-BV421, anti-hCD62L-PercpCy5.5, anti-hPD1-BV421 and anti-hCD45RO-PECy7, were from Biolegend. Goat anti-human IgG-PE was from SouthernBiotech. Streptavidin-PE, anti-hCD4-APC and anti-hCD25-APC were from BD biosciences. All FACS analyses were carried out using FACSCalibur or LSRII system (BD Biosciences) and analyzed using FlowJo (FLOWJO).
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