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29 protocols using vectashield

1

Pleural Tissue Doxorubicin Penetration Analysis

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Following treatments, tissue samples were rinsed with sterile 0.9% NaCl solution to eliminate superficial cytostatics and then immediately frozen in liquid nitrogen. Cryosections were prepared from the visceral and parietal pleura. Sections were mounted with VectaShield containing 1.5 µg/ml 4',6-diamidino-2-phenylindole (Thermo Fisher Scientific, Inc.) to stain nuclei. The penetration depth of doxorubicin was determined using a Nikon Eclipse 80i fluorescence microscope (magnification, x10; Nikon Instruments Europe BV). The distance between the luminal surface and the inner most positive staining for doxorubicin accumulation was measured and reported in µm (Figs. 2 and 3).
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2

Drosophila Larval Brain Chromosome Analysis

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Brains were dissected from wandering third instar larvae and squashed in 45% acetic acid. The slides were fixed in freshly made 4% formaldehyde in PBS for 20 min at room temperature and washed twice with 2×SSC. Slides were dehydrated in 70% ethanol for 10 min twice then in 95% ethanol for 5 min, followed by air drying. Hybridization was performed in 50% formamide, 10% dextran sulfate, 2×SSC, 0.5μM of each probe and up to 20μl of dH2O. The slides, covered with a coverslip, were heated to 91°C for 2 min, cooled briefly and incubated in a humid chamber in the dark overnight at room temperature. Post-hybridization washes were done three times in 0.1×SSC for 15 min each, and the slides were stained with DAPI (0.2μg/ml in 2×SSC) for 5 min, washed briefly in 2×SSC and allowed to air dry. Slides were mounted in Vectashield from Thermo and analyzed with a Zeiss Axio Image A2 microscope. The sequences of fluorescent probes from the 359 satellite and the rDNA IGS were the same as ones used by Jagannathan et al. [76 (link)].
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3

Immunofluorescence Analysis of hnRNPA1 and BG4

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After HCT116 cells were treated with control or hnRNPA1 siRNA for 48 h, they were fixed with 4% paraformaldehyde phosphate buffer solution (Nacalai Tesque, Kyoto, Japan) and treated with 0.5% (v/v) Triton X. These cells were further treated with 200 μg/mL RNase A for 1 h at 37 °C and then incubated overnight with 0.4 ng/μL of hnRNPA1 antibody or 4 ng/μL of BG4 antibody at 4 °C. After washing with PBS, the signals were visualized with Alexa Fluor 488 anti-mouse IgG or Alexa Fluor 555 anti-goat IgG (Thermo Fisher Scientific). The nuclei were stained with TO-PRO-3 (Thermo Fisher Scientific) using a coverslip with Vectashield (Thermo Fisher Scientific).
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4

Immunofluorescence Imaging of Dopaminergic Neurons

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Adult fly heads were fixed in 4% paraformaldehyde and washed with phosphate-buffered saline (PBS). The brains were then blocked with 5% normal goat serum in PBS containing 0.1% Triton-X 100 (PBST) and incubated with a murine anti-TH antibody (1:200, NB300-109; Novus Biologicals, USA) for 48 h at 4°C. After washing with PBST, the samples were incubated with an antimouse secondary antibody conjugated with Alexa Fluor 488 (1:400, A21441; Invitrogen, USA) overnight at 4°C. After further washing, the brains were mounted using Vectashield (Thermo Fisher Scientific, USA), and images were acquired via confocal microscopy (Carl Zeiss Microscopy, USA). Fluorescence intensity was analyzed using ImageJ software.
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5

Visualizing Airway Mucin Secretion via Immunostaining

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Frozen sections prepared identical to those used for spatial transcriptomics (see below) were used to visualize Muc5ac. Slides stored at −80°C were warmed to room temperature and washed twice in PBS (0.37 M NaCl, 27 mM KCl, 100 mM Na2HPO4, and 18 mM KH2PO4), then fixed in −20°C methanol for 30 min. Two more washes in PBS were performed, and then the tissue was blocked using 10% Horse Serum for 30 min. Next, two washes in PBS were followed by immunolabeling with Muc5ac (Cat. no. 1364248; U.S. Biotech) and ECAD (Cat. no. AF748; R&D Systems) overnight at 4°C. Two more washes in PBS were performed the following day, and fluorescently conjugated secondary antibodies were used to detect primary antibodies (Donkey anti-Rabbit 555 703-165-155; Jackson Labs, Donkey anti-Goat A11055; Life Tech) for 1 h and 30 min at room temperature. After two washes in PBS, DAPI (Cat. no. 62248; Thermo Fisher Scientific) was applied in the final wash step at 0.1 μg/ml to label nuclei for 15 min in PBS, and slides were coverslipped and mounted in Vectashield (Cat. no. H-1000; Vector Labs). Images were acquired using Leica SP8 confocal microscope and images were processed with Leica software. Tissue was imaged in most distal airways where mucin secretion is uncommon.
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Single-Molecule FISH for Embryo Staging

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RNA probes were made by Integrated DNA Technologies. Primary probe solution (2 μl of FLAPY probe + 98 μl of hybridization buffer) was added to samples and incubated in a humidity chamber at 37°C for 5 hours. Embryos were washed three times in smFISH wash buffer (10% formamide in 2× SSC/0.5% Triton X-100) for 5 min each. Embryos were washed for 1 hour at 37°C. Samples were washed twice more in smFISH wash buffer for 5 min each. Eight microliters of 1:3 Vectashield (Thermo Fisher Scientific) DAPI:PBS was added to samples and allowed to incubate for 5 min. A coverslip was placed on slides and sealed with nail polish. smFISH analysis was performed using the FISH-quant program (74 (link)). smFISH foci were localized in 3D space using Gaussian fitting. Quality control for localized spot is determined by its point spread function. Embryos were staged by counting the number of DAPI nuclei.
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7

Drosophila Brain Immunohistochemistry

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Immunohistochemistry was performed on 3- to 7-day-old flies. Flies were fixed with 4% (v/v) paraformaldehyde with 0.5% Triton X-100 for 2 hours and 40 min at room temperature. Brains were dissected in phosphate-buffered saline with 0.5%Tween 20 (PBST) and then washed twice (10 min) in 0.5% PBST buffer with rotation. The 10% normal goat serum (Jackson ImmunoResearch) was used for blocking overnight at 4°C. Mouse anti-TH at 1:1000 dilution, rat anti-TIM at 1:200 dilution, and chicken anti-GFP antibody at a 1:1000 were used as primary antibody and incubated with the brains overnight at 4°C, and the brains were then washed twice (10 min) in 0.5% PBST buffer at room temperature. The corresponding secondary antibodies were added and incubated overnight at 4°C. Brains were mounted in VECTASHIELD (Thermo Fisher Scientific) and imaged on a Leica SP5 confocal microscope. The images were processed by ImageJ.
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8

Lipid Droplet Imaging in Drosophila

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Fat bodies were dissected in ice-cold PBS and fixed in 4% paraformaldehyde at room temperature with gentle shaking for 15 min and washed in PBS for 15 min. Subsequently, the tissues were incubated with BODIPY493/503 (1:1000, D3922, Invitrogen, Eugene, USA) or Nile Red (1:1000, 72485, Sigma, St. Louis, USA) for 30 min at room temperature with gentle shaking in the dark and then washed in PBS for 30 min. Samples were mounted in Vectashield containing DAPI (Vector Laboratories, Burlingame, USA). For rabbit anti-GFP (A11122, 1:2000, Invitrogen) and HA-Tag (C29F4) rabbit mAb (1:8000, #3724, Cell Signaling, Danvers, USA) staining, tissues were incubated with the primary antibody overnight at 4 °C, washed in PBS for 30 min, followed by the secondary antibody goat anti-rabbit Alexa 647 (A21245, 1:200, ThermoFisher, Eugene, USA) or goat anti-rabbit Alexa 488 (A21206, 1:200, ThermoFisher) for 1 h, washed in PBS for 30 min and finally mounted in Vectashield containing DAPI. Confocal images were acquired using Zeiss LSM 800 confocal microscope with a 63X oil objective. Sequential scanning was performed every 0.2 μm for the reconstruction of the x-z and y-z sections. For immunostaining and the following experiments, including dietary tests, triglyceride, glucose and trehalose measurements, and lifespan, virgin females and males were measured separately.
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9

Immunofluorescence Staining of S100A9

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Cytospins were made at a concentration of 400,000 cells/mL and stored at À20 C). Cytopsins were fixed in 4% paraformaldehyde and washed with Tris-NaCl 0.05% Triton-X100 (Merck).
Cytospins were blocked by 2% donkey serum and incubated overnight with the primary antibody to S100A9 (#AF2065, 10 mg/mL; R&D Systems). Next, cytospins were washed and incubated for 1 hour with donkey anti-goat-FITC (#AF488; R&D Systems). After washing, cytospins were mounted with Vectashield (Thermo Scientific) containing 4,6-diamidino-2-phenylindole (DAPI). Immunofluorescence was observed using a Nikon Eclipse 90i (Nikon France SAS).
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10

TGF-β1 Signaling Pathway Modulation

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The following reagents were obtained from the respective commercial vendors. Recombinant human TGF-β1 from R&D Systems (Minneapolis, MN, USA), losartan from Selleck Chemicals (Houston, TX, USA), dexamethasone from Sigma-Aldrich (St. Louis, MO, USA), ganciclovir from Selleck Chemicals, normal horse serum (RTU Vectastain Universal Elite ABC Kit) from Vector Laboratories (Burlingame, CA, USA), murine monoclonal anti-CMV IE antibody (anti-CMV Immediate Early Antigen Antibody, #LS-C103255) from LSBio (Seattle, WA, USA), a goat anti-mouse antibody (VectaFluor R.T.U. DyLight 488 anti-mouse) from Vector Laboratories, rhodamine phalloidin and Vecta-Stain mounting media (VECTASHIELD) from Invitrogen (Carlsbad, CA, USA), a TGF-β1 enzyme-linked immunosorbent assay (ELISA) kit (Total TGF-β1 ELISA Kit with precoated plates) from BioLegend (San Diego, CA, USA), and a MTS assay kit (CellTiter 96® AQueous One Solution Cell Proliferation Assay) from Promega (Medison, WI, USA).
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